Photo by Derek Sarovich
PubMed link is both incomplete and too inclusive. The search includes some publications that are obviously not mine (e.g. articles on nanocomposites, ischemia, etc.) but developing a focused search was beyond my patience.
2023
Janke, N.R., C.H.D. Williamson, K.P. Drees, M. Suárez-Esquivel, A.R. Allen, J.T. Ladner, C.R. Quance, S. Robbe-Austerman, D. O’Callaghan, A.M. Whatmore, and J.T. Foster. 2023. Global genomic diversity of Brucella abortus: spread of a dominant lineage. Frontiers in Microbiology 14: 1287046 doi: 10.3389/fmicb.2023.1287046
Seidl, C., F. C. Ferreira, K.L. Parise, K.L. Paxton, E.H. Paxton, C.T. Atkinson, R.C. Fleischer, J.T. Foster, and A.M. Kilpatrick. 2023. Linking avian malaria parasitemia estimates from qPCR and microscopy reveals new infection patterns in Hawai'i. International Journal for Parasitology doi: 10.1016/j.ijpara.2023.10.001
Gabrielson, S.M.E., R. L. Mau, E. Dittmar, J.P. Kelley, C.E. Tarwater, D.R. Drake, J.H. Sperry, and J.T. Foster. 2023. DNA metabarcoding reveals diet composition of invasive rats and mice in Hawaiian forests. Biological Invasions. doi: 10.1007/s10530-023-03159-4
Ange-Stark, M., K.L. Parise, K.E. Langwig, J.R. Hoyt, T.L. Cheng, W. F. Frick, A.M. Kilpatrick, J. Gillece, M.D. MacManes, J.T. Foster. 2023. White-nose syndrome restructures bat skin microbiomes. Microbiology Spectrum doi: 10.1128/spectrum.02715-23
Moreno, E., E. A. Middlebrook, P. Altamirano-Silva, S. Dahouk, G. Araj, V. Arce-Gorvel, Á. Arenas-Gamboa, J. Ariza, E. Barquero-Calvo, G. Battelli, W. Bertu, J. Blasco, M. Bosilkovski, S. Cadmus, C. Caswell, J. Celli, C. Chacón-Díaz, E. Chaves-Olarte, D. Comerci, R. Conde-Álvarez, E. Cook, S. Cravero, M. Dadar, X. Boelle, F. Massis, R. Díaz, G. Escobar, L. Fernández-Lago, T. Ficht, J. T. Foster, B. Garin-Bastuji, J. Godfroid, J.-P. Gorvel, L. Güler, S. Erdenliğ-Gürbilek, A. Gusi, C. Guzmán-Verri, J. Hai, G. Hernández-Mora, M. Iriarte, N. Jacob, A. Keriel, M. Khames, S. Köhler, J.-J. Letesson, M. Loperena-Barber, I. López-Goñi, J. McGiven, F. Melzer, R. Mora-Cartin, J. Moran-Gilad, P. Muñoz, H. Neubauer, D. O'Callaghan, R. Ocholi, Á. Oñate, P. Pandey, G. Pappas, J. Pembroke, M. Roop, N. Ruiz-Villalonos, M. Ryan, S. Salcedo, M. Salvador-Bescós, F. Sangari, R. d.L. Santos, A. Seimenis, G. Splitter, M. Suárez-Esquivel, D. Tabbaa, M. Trangoni, R. Tsolis, N. Vizcaíno, G. Wareth, S. Welburn, A. Whatmore, A. Zúñiga-Ripa, and I. Moriyón. 2023. If you're not confused, you're not paying attention: Ochrobactrum is not Brucella. Journal of Clinical Microbiology 61:e00438-023. doi: 10.1128/jcm.00438-23
Laggan, N., K.L. Parise, J.P. White, H. Kaarakka, J. Redell, J. DePue, W. Scullon, J. Kath, J.T. Foster, A.M. Kilpatrick, Kilpatrick, K.E. Langwig, J. Hoyt. 2023. Host infection dynamics and disease-induced mortality modify species contributions to the environmental reservoir. Ecology. doi: 10.1002/ecy.4147
Pereira. C.R., R.C. Neia, S.B. Silva, C.H.D. Williamson, J.D. Gillece, D. O'Callaghan, J.T. Foster, I.R.C. Oliveira, J.S.S.B. Filho, A.P. Lage, V.A.C. Azevedo, E.M.S. Dorneles. 2023. Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution. Journal of Microbiological Methods 106772. doi: 10.1016/j.mimet.2023.106772
Szentiványi, T., C. McKee, G. Jones, and J.T. Foster. 2023. Trends in bacterial pathogens of bats: global distribution and knowledge gaps. Transboundary and Emerging Diseases 9285855. doi: 10.1155/2023/9285855
Rodrigues Pereira, C., R. Kato, F.A. Araújo, A. Lima, R.G. dos Santos, T. d. J. Sousa, R.C. Neia, S.B. da Silva, C.H.D. Williamson, J. Gillece, A.P. Lage, D. O’Callaghan, D. Pickard, G. Dougan, R.T. Juca Ramos, V.A. Azevedo, J.T. Foster, and E.M.S. Dorneles. 2023. Genomic investigation of antimicrobial resistance in Brucella abortus strains isolated from cattle in Brazil. Gene Reports. 31: 101777 doi: 10.1016/j.genrep.2023.101777
Kailing, M. J., J. R. Hoyt, J. P. White, H. M. Kaarakka, J. A. Redell, A. E. Leon, T. E. Rocke, J. E. DePue, W. H. Scullon, K. L. Parise, J. T. Foster, A. M. Kilpatrick, and K. E. Langwig. 2023. Sex-biased infections scale to population impacts for an emerging wildlife disease. Proceedings of the Royal Society B: Biological Sciences 290:20230040. doi: 10.1098/rspb.2023.0040
Langwig, K. E., A. M. Kilpatrick, M. J. Kailing, N. Laggan, J. P. White, H. M. Kaarakka, J. A. Redell, J. E. DePue, K. L. Parise, J. T. Foster, and J. R. Hoyt. 2023. Shifting effects of host physiological condition following pathogen establishment. Biology Letters 19: 20220574 doi: 10.1098/rsbl.2022.0574
Hoyt, J.R., K.L. Parise, J.E. DePue, H.M. Kaarakka, J.A. Redell, W.H. Scullon, R. O’Reskie J.T. Foster, A.M. Kilpatrick, K.E. Langwig, J.P. White. 2023. Reducing environmentally mediated transmission to moderate impacts of an emerging wildlife disease. Journal of Applied Ecology. doi: 10.1111/1365-2664.14371
Neddermeyer, J.H., K.L. Parise, A.M. Kilpatrick, and J.T. Foster. 2023. Nowhere to fly: Ubiquitous avian malaria from ocean to summit on a Hawaiian island. Biological Conservation 279: 109943. doi: 10.1016/j.biocon.2023.109943
Rodrigues Pereira, C., T. d. J. Sousa, A. L. da Silva, R. Gonçalves dos Santos, D. A. Costa Custódio, D. J. J. Pickard, D. O’Callaghan, J. T. Foster, S. d. C. Soares, R. T. J. Ramos, A. Góes-Neto, M. M. da Costa, A. P. Lage, V. Azevedo, and E. M. S. Dorneles. 2023. First report and whole-genome sequencing of Pseudochrobactrum saccharolyticum in Latin America. Microbes and Infection 25: 105018. doi: 10.1016/j.micinf.2022.105018
Foster, J.T., T. Pearson, P. Keim. 2023. Genomic microbiology as applied to animal forensics. The Microbiologist 563. Applied Microbiology International Feature of Forensic Microbiology Issue
Caswell, C., A. Arenas-Gamboa, and J.T. Foster. 2023. Chapter 16 Brucella in Pathogenesis of Bacterial Infections in Animals: 5th edition. (Prescott, J. F., MacInnes, J. I., Van Immerseel, F., Boyce, J. D., Rycroft, A. N, J. Vázquez-Boland, eds.) Wiley-Blackwell. ISBN: 978-1-119-75486-2
2022
Navine, A.K., K.L. Paxton, E.H. Paxton, P.J. Hart, J.T. Foster, N. McInerney, R.C. Fleischer, and E. Videvall. 2022. Different cloacal bacteria associated with avian malaria survival in susceptible Hawaiian honeycreeper than sympatric malaria-resistant bird. Molecular Ecology doi: 10.1111/mec.16743
Souza-Cole, I., M.P. Ward, R.L. Mau, J.T. Foster, and T.J. Benson. 2022. Eastern Whip-poor-will abundance is influenced by urban land cover and moth abundance. Ornithological Applications. doi: 10.1093/ornithapp/duac032
Vizentin-Bugoni, J., J. H. Sperry, J.P. Kelley, J.T. Foster, D.R. Drake, S.B. Case, J.M. Gleditsch, A.M. Hruska, R.C. Wilcox, C.E. Tarwater. 2022. Mechanisms underlying interaction frequencies and robustness of a novel seed dispersal network in Hawaii. Proceedings Royal Society B. 289: 20221490. doi: 10.1098/rspb.2022.1490
O’Rourke, D., N.P. Rouillard, K.L. Parise, J.T. Foster. 2022. From forest to barn: molecular diet analyses of New Hampshire bats reveal variation in prey consumption across space and time. Scientific Reports 12: 14334 doi: 10.1038/s41598-022-17631-z
Case, S.B., K. Postelli, D.R. Drake, J. Vizentin-Bugoni, J.T. Foster, J.H. Sperry, J.P. Kelley, and C.E. Tarwater. 2022. Introduced galliforms as seed predators and dispersers in Hawaiian forests. Biological Invasions. doi: 10.1007/s10530-022-02830-6
Frick, W.F., E. Johnson, T.L. Cheng, J.S. Lankton, R. Warne, J. Dallas, K.L. Parise, J.T. Foster, J.G. Boyles, L.P. McGuire. 2022. Experimental inoculation trial to determine the effects of temperature and humidity on the fungal pathogen that causes white-nose syndrome in hibernating bats. Scientific Reports. 12: 971. doi: 10.1038/s41598-022-04965-x
Maslo, B., R. L. Mau, K. Kerwin, R. McDonough, E. McHale, and J. T. Foster. 2022. Bats provide a critical biodiversity-based ecosystem service by consuming a large diversity of agricultural pest insects. Agriculture, Ecosystems and Environment. 324: 107722 doi: 10.1016/j.agee.2021.107722
2021
Robeson, M., B. Kaehler, M. Dillon, D.R. O’Rourke, J.T. Foster, N.A. Bokulich. 2021. Automated and extensible marker gene sequence and reference database management with RESCRIPt. PLoS Computational Biology. 17(11): e1009581. doi: 10.1371/journal.pcbi.1009581
Yang, Y., J.T. Foster, M. Yi, L. Zhan, Y. Zhang, B. Zhou, J. Jiang, and L. Mei. 2021. Phenotypic homogeneity of emetic Bacillus cereus isolates in China. Letters in Applied Microbiology doi: 10.1111/lam.13527
Bechtel, M.J., K.K. Drake, T.C. Esque, N.C. Nieto, J.T. Foster, and M.B. Teglas. Borreliosis transmission from ticks associated with desert tortoise burrows: examples of tick-borne relapsing fever in the Mojave Desert. Vector-borne and Zoonotic Diseases. doi: 10.1089/vbz.2021.0005
Cassin-Sackett, L., M.G. Campana, N.R. McInerney, H.C. Lim, N.A.S. Przelomska, B. Masuda, R.T. Chesser, E.H. Paxton, J.T. Foster, L.H. Crampton, and R. C. Fleischer. 2021. Genetic structure and population history in two critically endangered Kauai honeycreepers. Conservation Genetics. doi: 10.1007/s10592-021-01382-x
Ridenour, C.L., J. Cocking, S. Poidmore, D. Erickson, B. Brock, M. Valentine, C. Roe, S Young, J. Henke, K.Y Hung, J. Wittie, E. Stefanakos, C. Sumner, M. Rueda, V. Raman, N. Seaton, W. Bendik, H.M. Hornstra O’Neill, K. Sheridan, H. Centner, D. Lemmer, V. Fofanov, K. Smith, J. Will, J. Townsend, J.T. Foster, P.S. Keim, D.M. Engelthaler, and C.M. Hepp. 2021. St. Louis Encephalitis Virus in the Southwestern United States: a phylogeographic case for a multi-variant introduction event. Frontiers in Genetics. 12:837 doi: 10.3389/fgene.2021.667895
Suárez-Esquivel, M., N. Ruiz-Villalobos, W. Hidalgo-Jara, C. Chacón-Díaz, A.M. Zúñiga-Pereira, M. Masís-Mora, E. Fernández-Fernández, G. Hernández-Mora, E. Barquero-Calvo, E. Chaves-Olarte, N.R. Thomson, J.T. Foster, E. Moreno and C. Guzmán Verri. 2021. Canine brucellosis in Costa Rica reveals widespread Brucella canis infection and the recent introduction of foreign strains. Veterinary Microbiology. 257:109072. doi: 10.1016/j.vetmic.2021.109072
Whatmore, A.M. and J.T. Foster. 2021. Emerging genetic diversity of Brucella: implications for taxonomy, typing and molecular epidemiology. Infection, Genetics and Evolution 92:104865. doi: 10.1016/j.meegid.2021.104865
Langwig, K.E., J.P. White, K.L. Parise, H.M. Kaarakka, J.A. Redell, J.E. DePue, W.H. Scullon, J.T. Foster, A.M. Kilpatrick, J.R. Hoyt. 2021. Tradeoffs between mobility and infectiousness in the spatial spread of an emerging pathogen. Journal of Animal Ecology. doi: 10.1111/1365-2656.13439
Knight, E.C., A-L. Harrison, A.L. Scarpignato, S.L. Van Wilgenburg, E.M. Bayne, J. Ng, E. Angell, R. Bowman, M. Brigham, B. Drolet, W. Easton, T. Forrester, J.T. Foster, S. Haché, K. Hannah, J. Ibarzabal, T. Imlay, S. MacKenzie, L. McGuire, G. Newberry, D. Newstead, A. Sidler, D. Swanson, P. Sinclair, J. Stephens, P. Thomas, J. Tremblay, P.P. Marra. 2021. A comprehensive approach to estimating migratory connectivity across the annual cycle reveals peaks in spatial and temporal connectivity that can direct conservation efforts. Ecography. 44:1-15. doi: 10.1111/ecog.05111
O’Rourke, D., M.T. Mangan, K.E. Mangan, N.A. Bokulich, M.D. MacManes, and J.T. Foster. 2021. Lord of the Diptera (and moths and a spider): molecular diet analyses of Indiana bats in Illinois. Frontiers in Ecology and Evolution. 9: 623655. doi: 10.3389/fevo.2021.623655
van Dijk, J.G.B., S.A. Iverson, H.G. Gilchrist, N.J. Harms, H. Hennin, O.P. Love, I.I. Buttler, S. Lesceu, J.T. Foster, M.R. Forbes, and C. Soos. 2021. Herd immunity drives the epidemic fadeout of avian cholera in Arctic-nesting seabirds. Scientific Reports. 11:1046. doi: 10.1038/s41598-020-79888-6
Vizentin-Bugoni, J., J.H. Sperry, J.P. Kelley, J.M. Gleditsch, J.T. Foster, D.R. Drake, A.M. Hruska, R. Wilcox, S. Case, C.E. Tarwater. 2021. Ecological correlates of species’ roles in highly invaded seed dispersal networks. Proceedings of the National Academy of Sciences USA. 118 (4): e2009532118 doi: 10.1073/pnas.2009532118
2020
Janowicz, A., K. Zilli, M. Ancora, M. Tittarelli, F. Sacchini, E. Di Giannatale, J.W. Sahl, J.T. Foster, G. Garofolo. 2020. Evolutionary history and current distribution of West Mediterranean lineage of Brucella melitensis in Italy. Microbial Genomics. 6(11). doi: 10.1099/mgen.0.000446
Rouzic, N., L. Desmier, M-E. Cariou, E. Gay, J.T. Foster, C.H.D. Williamson, F. Schmitt, M. Le Henaff, A. Le Coz, A. Lorléac’h, J-P. Lavigne, D. O’Callaghan and A. Keriel. 2020. First case of human brucellosis caused by an amphibian-type Brucella sp. Clinical Infectious Diseases. doi: 10.1093/cid/ciaa1082
O’Rourke, D., N.A. Bokulich, M.D. MacManes, and J.T. Foster. 2020. A total crapshoot? evaluating bioinformatic decisions in animal diet metabarcoding analyses. Ecology & Evolution. doi: 10.1002/ece3.6594
Ineson, K., T.J. O'Shea, C.W. Kilpatrick, K.L. Parise, and J.T. Foster. 2020. Ambiguities in using telomere length for age determination in two North American bat species. Journal of Mammalogy. doi: 10.1093/jmammal/gyaa064
Suárez-Esquivel, M., G Hernández-Mora, N. Ruiz-Villalobos, E. Barquero-Calvo, C. Chacón-Díaz, J.T. Ladner, G. Oviedo-Sánchez, J.T. Foster, N. Rojas-Campos, E. Chaves-Olarte, N.R. Thomson, E. Moreno and C. Guzmán-Verri. 2020. Persistence of Brucella abortus lineages revealed by genomic characterization and phylotemporal analysis. PLoS Neglected Tropical Diseases 14(4): e0008235. doi: 10.1371/journal.pntd.0008235
Hoyt, J.R., K.E. Langwig, K. Sun, K.L. Parise, A. Li, Y. Wang, X. Huang, L. Worledge, H. Miller, J.P. White, H. Kaarakka, J. Redell, T. Görföl, S. A. Boldogh, D. Fukui, M. Sakuyama, S. Yachimori, A. Sato, M. Dalannast, A. Jargalsaikhan, N. Batbayar, Y. Yovel, E. Amichai, I. Natradze, W.F. Frick, J.T. Foster, J. Feng, and A.M. Kilpatrick. 2020. Environmental reservoir dynamics predict global infection patterns and population impacts for the fungal disease white-nose syndrome. Proceedings of the National Academy of Sciences USA. 117: 7255-7262 doi: 10.1073/pnas.1914794117
Pearson, T., J.W. Sahl, C.M. Hepp, K. Handady, H. Hornstra, A.J. Vazquez, E. Settles, M. Mayo, M. Kaestli, C.H. Williamson, E.P. Price, D.S. Sarovich, J.M. Cook, S. Wolken, R.A. Bowen, A. Tuanyok, J.T. Foster, K.P. Drees, T.J. Kidd, S.C. Bell, B.J. Currie, and P. Keim. 2020. Pathogen to commensal: longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. PLoS Pathogens. 16: e1008298. doi: 10.1371/journal.ppat.1008298
Allen, A., G. Milne, K. Drees, E. Breadon, J. Graham, P. McAdam, K. Jones, L. Wright, R. Skuce, A. Whatmore, and J.T. Foster. 2020. Genomic epizoology of a Brucella abortus outbreak in Northern Ireland. Infection, Genetics and Evolution. 81: 104235. doi: 10.1016/j.meegid.2020.104235
Keim, P., J.W. Sahl, T. Pearson, A. Vogler, C.H. Williamson, D. Birdsell, R.T. Okinaka, J.T. Foster, D.M. Wagner. 2020. Forensic analysis in
bacterial pathogens, Chapter 9. In Microbial Forensics, 3rd edition (B. Budowle, S. A. Morse and S. Schutzer, eds). Elsevier Press. Pp. 123-140. doi: 10.1016/B978-0-12-815379-6.00009-X
Foster, J.T., R.L. Bull, and P. Keim. 2020. Chapter 16. Ricin Forensics: Comparisons to Microbial Forensics. In Microbial Forensics, 3rd edition (B. Budowle, S. A. Morse and S. Schutzer, eds). Elsevier Press. Pp. 241-250. doi: 10.1016/B978-0-12-815379-6.00016-7
2019
Hoyt, J.R., K.E. Langwig, J.P. White, J.A. Redell, H.M. Kaarakka, K.L. Parise, W.F. Frick, J.T. Foster, A.M. Kilpatrick. 2019. Field trial of a probiotic bacteria to protect bats from white-nose syndrome. Scientific Reports 9:9158. doi: 10.1038/s41598-019-45453-z
Vizentin-Bugoni, J., C.E. Tarwater, J.T. Foster, D.R. Drake, J.M. Gleditsch, A.M. Hruska, J.P. Kelley, J.H. Sperry. 2019. Structure, spatial dynamics, and stability of novel mutualistic networks. Science. 364: 78–82. doi: 10.1126/science.aau8751
Huebschman, J.J., S.A. Hoerner, J.P. White, H.M. Kaarakka, K.L. Parise, and J.T. Foster. 2019. Detection of Pseudogymnoascus destructans during summer on Wisconsin bats. Journal of Wildlife Diseases. 55: . doi: 10.7589/2018-06-146
Warren, C.C., L.K. Berthold, H.L. Mounce, J.T. Foster, L.C. Sackett. 2019. Evaluating the risk of avian disease in reintroducing the endangered Kiwikiu (Maui Parrotbill: Pseudonestor xanthophrys) to Nakula NAR, Maui, Hawai‘i. Pacific Cooperative Studies Unit Technical Report #201. University of Hawai`i at Mānoa, Department of Botany. Honolulu, HI. 50 pp. PSCU 10125/68734
2018
Hoyt, J.R., K.E. Langwig, J.P. White, H.M. Kaarakka, J. Redell, A. Kurta, J. DePue, W. Scullon, K.L. Parise, J.T. Foster, W.F. Frick, and A.M. Kilpatrick. 2018. Cryptic connections illuminate pathogen transmission within community networks. Nature 563:710-713. doi: 10.1038/s41586-018-0720-z
Koster, K. J., A. Largen, J. T. Foster, K. P. Drees, L. Qian, E. Desmond, X. Wan, S. Hou, and J. T. Douglas. 2018. Genomic sequencing is required for identification of tuberculosis transmission in Hawaii. BMC Infectious Diseases 18:608. doi: 10.1186/s12879-018-3502-1
Dool, S., A. Altewischer, N.M. Fischer, K.P. Drees, J.T. Foster, M. Fritze, and S.J. Puechmaille. 2018. Mating type determination within a microsatellite multiplex for the fungal pathogen Pseudogymnoascus destructans, the causative agent of white-nose disease in bats. Conservation Genetics Resources doi: 10.1007/s12686-018-1064-6
Koster, K., A. Largen, J.T. Foster, K.P. Drees, L. Qian, E.P. Desmond, X. Wan, S. Hou, J.T. Douglas. 2018. Whole genome SNP analysis suggests unique virulence factor differences of the Beijing and Manila families of Mycobacterium tuberculosis found in Hawaii. PLoS One 13: e0201146 doi: 10.1371/journal.pone.0201146
Foster, J.T., F.M. Walker, B.D. Rannals, R. Tiller, A. Hoffmaster, P. Keim, and M. Saqib. 2018. African lineage of Brucella melitensis in Omani livestock. Frontiers in Microbiology 8: 2702. doi: 10.3389/fmicb.2017.02702
Palmer, J.M., K.P. Drees, J.T. Foster, D.L. Lindner. 2018. Shining light on white-nose syndrome of bats: extreme sensitivity to ultra-violet light in Pseudogymnoascus destructans. Nature Communications doi: 10.1038/s41467-017-02441-z
Foster, J.T., F. Walker, B. Rannals, and D. Sanchez. 2018. Population genetics of an island invasion by Japanese Bush-Warblers in Hawaii, USA. The Auk 135: doi: 10.1642/AUK-17-120.1
Moore, M., K. Field, M. Behr, G. Turner, M. Furze, D. Stern, P. Allegra, S. Bouboulis, C. Musante, M. Vodzak, M. Biron, M. Meierhofer, W. Frick, J.T. Foster, D. Howell, J. Kath, A. Kurta, G. Nordquist, J. Johnson, T. Lilley, B. Barrett, D. Reeder. 2018. Energy conserving thermoregulatory patterns and lower disease severity in a bat resistant to the impacts of white-nose syndrome. Journal of Comparative Physiology B 1-14. doi: 10.1007/s00360-017-1109-2
2017
Drees, K.P., J.M. Lorch, S.J. Puechmaille, K. Parise, G. Wibbelt, J.R. Hoyt, K. Sun, A. Jargalsaikhan, M. Dalannast, J. Palmer, D.L. Lindner, A.M. Kilpatrick, T. Pearson, P.S. Keim, D.S. Blehert, and J.T. Foster. 2017. Phylogenetics of a fungal invasion: Origins and widespread dispersal of white-nose syndrome. mBio 8: e01941-17. doi: 10.1128/mBio.01941-17
Bernard, R.F., E.V. Willcox, J.T. Foster, K. L. Parise, and G.F. McCracken. 2017. White-nose syndrome fungus, Pseudogymnoascus destructans, on bats captured emerging from caves during winter in the southeastern United States. BMC Zoology 2:12. doi: 10.1186/s40850-017-0021-2
Campana, M.G, N.P. Kurata, J.T. Foster, R.C. Fleischer, and K.M. Helgen. 2017. Detection of the earliest known Pseudogymnoascus destructans infection in a French bat from 1918. Emerging Infectious Diseases 23:1611-1612. doi:10.3201/eid2309.170875
Gleditsch, J.M., A.M. Hruska, and J.T. Foster. 2017. Temporal tracking of resources and the implications for seed Dispersal. Frontiers in Ecology and Evolution 5:98. doi: 10.3389/fevo.2017.00098
Drees, K.P., K.L. Parise, S. Rivas, L.L. Felton, S. Puechmaille, P. Keim, and J.T. Foster. 2017. Characterization of microsatellites to distinguish Pseudogymnoascus destructans isolates for white-nose syndrome genetic analysis. Journal of Wildlife Diseases. In press. doi: 10.7589/2016-09-217
Al Dahouk, S., S. Köhler, A. Occhialini, M.P. Jiménez de Bagüés, J.A. Hammerl, T. Eisenberg, G. Vergnaud, A. Cloeckaert, M.S. Zygmunt, A.M. Whatmore, F. Melzer, K.P. Drees, J.T. Foster, A.R. Wattam, and H.C. Scholz. 2017. Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts. Scientific Reports 7:44420. doi: 10.1038/srep44420
Mahoney, S.M., T.C. Theimer, M.J. Johnson, and J.T. Foster. 2017. Similar dietary but different numerical responses to nonnative tamarisk by two native warblers. Biological Invasions. doi: 10.1007/s10530-017-1408-2
Frick, W.F., T.L. Cheng, K.E. Langwig, J.R. Hoyt, A. Janicki, K. Parise, J.T. Foster, and A.M. Kilpatrick. 2017. Pathogen dynamics during invasion and establishment of white-nose syndrome explain mechanisms of host persistence. Ecology 98:624–631. doi: doi: 10.1002/ecy.1706
Garofolo, G., E. Di Giannatale, I. Platone, K. Zilli, L. Sacchini, A. Abass, G. Di Donato, M. Ancora, C. Cammà, F. De Massis, P. Calistri, K.P. Drees and J.T. Foster. 2017. Origins and global context of Brucella abortus in Italy. BMC Microbiology 17:28. doi: 10.1186/s12866-017-0939-0
Langwig, K.E., J.R. Hoyt, K.L. Parise, W.F. Frick, J.T. Foster, and A.M. Kilpatrick. 2017. Resistance in persisting bat populations after white-nose syndrome invasion. Philosophical Transactions of the Royal Society B. 372: 20160044. doi: 10.1098/rstb.2016.0044
Cheng, T.L., H. Mayberry, L.P. McGuire, J.R. Hoyt, K.E. Langwig, H. Nguyen, K.L. Parise, J.T. Foster, C.K.R. Willis, A.M. Kilpatrick, W.F. Frick. 2017. Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome. Journal of Applied Ecology doi: 10.1111/1365-2664.12757
2016
Avena, C., L. Parfrey, J. Leff, H. Archer, W. Frick, K. Langwig, A.M. Kilpatrick, K. Powers, J.T. Foster, and V. McKenzie. 2016. Deconstructing the bat skin microbiome: influences of the host and the environment. Frontiers in Microbiology 7:1753. doi: 10.3389/fmicb.2016.01753
Langwig, K.E., W.F. Frick, J.R. Hoyt, K.L. Parise, K.P. Drees, T.H. Kunz, J.T. Foster, A.M. Kilpatrick. 2016. Drivers of variation in species impacts for a multi-host fungal disease of bats. Philosophical Transactions of the Royal Society B 371: 20150456. doi: 10.1098/rstb.2015.0456
Vogler, A.J., R. Nottingham, J. Busch, J. Sahl, M. Shuey, J.T. Foster, J. Schupp, S. Smith, T. Rocke, P. Keim, and D.M. Wagner. 2016. VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation. Infection, Genetics & Evolution 45: 297-302 doi: 10.1016/j.meegid.2016.09.019
Cheng, T.L., H. Mayberry, L.P. McGuire, J.R. Hoyt, K.E. Langwig, H. Nguyen, K.L. Parise, J.T. Foster, C.K.R. Willis, A.M. Kilpatrick, W.F. Frick. 2016. Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome. Journal of Applied Ecology. doi: 10.1111/1365-2664.12757
Lorch, J.M., J. Palmer, D. Lindner, A. Ballmann, K.G. George, K. Griffin, S. Knowles, J. Huckabee, K.H. Haman, C.D. Anderson, P.A. Becker, J.B. Buchanan, J.T. Foster, and D.S. Blehert. 2016. First detection of bat white-nose syndrome in western North America. mSphere 1: e00148-16. doi: 10.1128/mSphere.00148-16
Drees, K.P., J. Palmer, R. Sebra, J. Lorch, C. Chen, C. Wu, J.W. Bok, N. Keller, D.S. Blehert, C. Cuomo, D. Lindner, and J.T. Foster. 2016. Use of multiple sequencing technologies to produce a high quality genome of the fungus Pseudogymnoascus destructans, the causative agent of bat white-nose syndrome. Genome Announcements 4: e00445-16. doi:10.1128/genomeA.00445-16
Kamath, P. L., J. T. Foster, K. P. Drees, G. Luikart, C. Quance, N. J. Anderson, P. R. Clarke, E. K. Cole, M. L. Drew, W. H. Edwards, J. C. Rhyan, J. J. Treanor, R. L. Wallen, P. J. White, S. Robbe-Austerman, and P. C. Cross. 2016. Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock. Nature Communications 7:11448 doi:10.1038/ncomms11448
Blanchong, J.A., S.J. Robinson, M.D. Samuel, and J.T. Foster. 2016. Application of genetics and genomics to wildlife epidemiology. Journal of Wildlife Management. 80:593-608 doi: 10.1002/jwmg.1064
Hammond, R.L., L.H. Crampton, and J.T. Foster. 2016. Nesting success of native and introduced forest birds on the island of Kaua‘i. Journal of Avian Biology 47:252-262 doi: 10.1111/jav.00763
Williamson, C.H.D., J.W. Sahl, T.J. Smith, G. Xie, B.T. Foley, L.A. Smith, R. Fernandez, M. Lindstrom, H. Korkeala, P. Keim, J.T. Foster, and K. Hill. 2016. Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing clostridia. BMC Genomics 17:180
doi:10.1186/s12864-016-2502-z
McGuire, L.P., L. Warnecke, J.M. Turner, G. McGregor, T.K. Bollinger, V. Misra, J.T. Foster, W.F. Frick, A.M. Kilpatrick, and C.K.R. Willis. 2016. White-nose syndrome disease severity and a comparison of diagnostic methods. EcoHealth. doi: 10.1007/s10393-016-1107-y
Hoyt, J.R., K.E. Langwig, K. Sun, G. Lu, K. Parise, T. Jiang, W. Frick, J.T. Foster, J. Feng, A.M. Kilpatrick. 2016. Host persistence or extinction from emerging infectious diseases: insights from endemic and invading regions. Proceedings Royal Society B. 283: 20152861. doi: 10.1098/rspb.2015.2861
Garner, B.A., B.K. Hand, B. Addis, S. Amish, L. Bernatchez, J.T. Foster, K.M. Miller, S.R. Narum, J. Seeb, L. Seeb, W.D. Templin, P. Sunnucks, J. Strait, K.I. Warheit, T.R. Seamons, J. Wenburg, J. Olsen, G. Luikart. 2016. Genomics in conservation: case studies for bridging the gap from data to application. Trends in Ecology & Evolution. S0169-5347(15)00272-4. doi: 10.1016/j.tree.2015.10.009
Hoyt, J.R., K. Sun, K.L. Parise, G. Lu, K.E. Langwig, T. Jiang, S. Yang, W.F. Frick, A.M. Kilpatrick, J.T. Foster, and J. Feng. 2016. Widespread occurrence of Pseudogymnoascus destructans in northeast China: implications for the global distribution of white-nose syndrome. Emerging Infectious Diseases 22(1):140-142 doi:10.3201/eid2201.151314
2015
Garofolo, G., J.T. Foster, K. Drees, K. Zilli, I. Platone, M. Ancora, C. Cammà, F. De Massis, P. Calistri, and E. Di Giannatale. 2015. Genome sequences of eleven Brucella abortus isolates from persistently infected Italian regions. Genome Announcements. 3(6): e01402-15. doi: 10.1128/genomeA.01402-15
Leiser, O.P., E.D. Merkley, B.H. Clowers, B.L. Deatherage Kaiser, J.R. Hutchison, D.W. Wagner, P. Keim, J.T. Foster, and H. Kreuzer. 2015. Investigation of Yersinia pestis laboratory adaptation through a combined genomics and proteomics approach. PLoS One 10(11):e0142997. doi:10.1371/journal.pone.0142997
Foster, J.T., T. Pearson, P. Keim. 2015. Genomic microbiology as applied to animal forensics. Microbiologist 16:14-17. September issue Society for Applied Microbiology
Janicki, A.F., W.F. Frick, A.M. Kilpatrick, K.L. Parise, J.T. Foster, and G.F. McCracken. 2015. Efficacy of visual surveys for white-nose syndrome at bat hibernacula. PLoS One 10: e0133390. doi: 10.1371/journal.pone.0133390
Rónai, Z., Z. Kreizinger, A. Dán, K. Drees, J.T. Foster, K. Bányai, S. Marton, L. Szeredi, S. Jánosi, and M. Gyuranecz. 2015. First isolation and characterization of Brucella microti from wild boar. BMC Veterinary Research 11:147 doi:10.1186/s12917-015-0456-z
Olson, N.D., S.P. Lund, R. Colman, J.T. Foster, J.W. Sahl, J.M. Schupp, P. Keim, J.B. Morrow, M. Salit, and J.M. Zook. 2015. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Frontiers in Genetics 6:235. doi:0.3389/fgene.2015.00235
Sahl, J.W., J.M. Schupp, D.A. Rasko, R. Colman, J.T. Foster, and P. Keim. 2015. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Medicine 7:52 doi:10.1186/s13073-015-0176-9
Langwig, K.E., J. Hoyt, J. Kath, T. Cheng, K. Parise, W.F. Frick, J.T. Foster, A.M. Kilpatrick. 2015. Invasion dynamics of white-nose syndrome fungus, Midwestern U.S. 2012-2014. Emerging Infectious Diseases 21:1023-1026. doi:10.3201/eid2106.150123
Barlow, A. M., L. Worledge, H. Miller, K. Drees, P. Wright, J.T. Foster, C. Sobek, A.M. Borman and M. Fraser. 2015. The first confirmation of Pseudogymnoascus destructans in British Bats. Veterinary Record 177:73. doi:10.1136/vr.102923
Bernard, R.F., J.T. Foster, E.V. Willcox, and G.F. McCracken. 2015. Molecular detections of the causative agent of white-nose syndrome on Rafinesque's big-eared bats (Corynorhinus rafinesquii) and two species of migratory bats in the Southeastern United States. Journal of Wildlife Diseases 51:519–522. doi:10.7589/2014-08-202
Frick, W.F., S. Puechmaille, B. Nickel, J.R. Hoyt, K.E. Langwig, J.T. Foster, I. Horáček, T. Bartonička, K. Barlow, A-J. Haarsma, J. van der Kooij, L. Rodrigues, C. Herzog, R. Reynolds, C. Stihler, G.G. Turner, D. Fellers, A.M. Kilpatrick. 2015. Disease alters macroecological patterns of North American bats. Global Ecology and Biogeography. 24:741-749. doi: 10.1111/geb.12290
Hammond, R.L., L.H. Crampton, and J.T. Foster. 2015. Breeding biology of two endangered forest birds on the island of Kaua‘i, Hawai’i. Condor 117:31-40. doi:10.1650/condor-14-75.1
Smith, T.J., K.K. Hill, G. Xie, B.T. Foley, C. Williamson, J.T. Foster, S.L. Johnson, O. Chertov, H. Teshima, H.S. Gibbons, L.A. McNew, M.A. Karavis and L.A. Smith. 2015. Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes. Infection, Genetics and Evolution 30:102-113. doi:10.1016/j.meegid.2014.12.002
Price, E.P., D.S. Sarovich, L. Viberg, M. Mayo, M. Kaestli, A. Tuanyok, J.T. Foster, P. Keim, T. Pearson, and B.J. Currie. 2015. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology 53:282-286. doi:10.1128/JCM.02560-14
2014
Langwig. K.E., W.F. Frick, R. Reynolds, K.L. Parise, K.P. Drees, J.R. Hoyt, T.L. Cheng, T.H. Kunz, J.T. Foster, and A.M. Kilpatrick. 2014. Drivers of seasonality in white-nose syndrome, a disease of hibernating mammals. Proceedings of the Royal Society B. 282: 20142335. dx.doi.org/10.1098/rspb.2014.2335.
Gopaul, K.K., J. Sells, R. Lee, S.M. Beckstrom-Sternberg, J.T. Foster and A.M. Whatmore. 2014. Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species. BMC Research Notes 7:903. doi:10.1186/1756-0500-7-903.
Wan, X., L. Qian, S. Hou, K.P. Drees, J.T. Foster, J.T. Douglas. 2014. Complete genome sequences of Beijing and Manila family strains of Mycobacterium tuberculosis. Genome Announcements 2(6):e01135-14. doi:10.1128/genomeA.01135-14.
Rawat, A., D.M. Engelthaler, E.M. Driebe, P. Keim, and J.T. Foster. 2014. MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing. PLoS ONE 9:e110915. doi: 10.1371/journal.pone.0110915.
Okinaka, R.T., J. Challacombe, K. Drees, D. Birdsell, N. Janke, A. Naumann, M. Seymour, H. O’Neill, J. Schupp, J. Sahl, J.T. Foster, T. Pearson, P. Turnbull and P. Keim. 2014. The genome sequence of Bacillus anthracis, STI, the Sterne-like Georgian/Soviet vaccine strain. Genome Announcements 2: e00853-14. doi: 10.1128/genomeA.00853-14.
Kreizinger, Z., J.T. Foster, Z. Rónai, K. Sulyok, A. Csivincsik, E. Wehmann, S. Jánosi, and M. Gyuranecz. 2014. Genetic relatedness of Brucella suis biovar 2 isolates from hares, wild boars and domestic pigs from Hungary and Europe. Veterinary Microbiology 172:492-498. DOI: 10.1016/j.vetmic.2014.05.031.
Legagneux, P., L.L. Berzins, M. Forbes, N.J. Harms, H. Hennin, S. Bourgeon, J.T. Foster, H.G. Gilchrist, J. Bety, O.P. Love, S. Descamps, G. Burness. 2014. No selection on avian immune traits in response to a highly virulent pathogen. Evolutionary Applications 7:765-773. DOI:10.1111/eva.12180.
Walker, F.M., J.T. Foster, K.P. Drees, and C.L. Chambers. 2014. Spotted bat (Euderma maculatum) microsatellite discovery using Illumina sequencing. Conservation Genetics Resources 6:457-459. DOI:10.1007/s12686-013-0125-0.
Shuey, M.M., K. Drees, D. Lindner, P. Keim, and J.T. Foster. 2014. A highly sensitive qPCR assay for the detection and differentiation of Pseudogymnoascus destructans and Pseudogymnoascus species. Applied and Environmental Microbiology 80:1726-1731. DOI: 10.1128/AEM.02897-13.
Atkinson, C.T., R.B. Utzurrum, D.A. LaPointe, R.J. Camp, L.H. Crampton, J.T. Foster, and T.W. Giambelluca. 2014. Changing climate and the altitudinal range of avian malaria in the Hawaiian Islands-an ongoing conservation crisis on the island of Kaua‘i. Global Change Biology 8:2426-2436. DOI: 10.1111/gcb.12535.
Wattam, R., J.T. Foster, S. Mane, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, A. Dickerman, P. Keim, T. Pearson, M. Shukla, D. Ward, K. Williams, B. Sobral, R. Tsolis, A. Whatmore, and D. O’Callaghan. 2014. Comparative phylogenomics and evolution of the Brucellae: a path to virulence. Journal of Bacteriology 196:920-30. DOI: 10.1128/JB.01091-13.
Baltrus, D., K. Dougherty, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, and J.T. Foster. 2014. Incongruence between MLST and whole genome based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale. Molecular Plant Pathology. 15: 461–465. DOI: 10.1111/mpp.12103.
2013
Qu, P-H., S-Y Chen, H.C. Scholz, H-J Busse, G. Quan, P. Kämpfer, J.T. Foster, S.P. Glaeser, C. Cha, and Z-C Yang. 2013. Francisella guangzhouensis sp. nov., isolated from air conditioning systems. International Journal of Systematic and Evolutionary Microbiology 63:3628-3635. DOI: 10.1099/ijs.0.049916-0.
Busch, J.D., R. Van Andel, T. Rocke, N. Stone, K. Cobble, J. Lee, R. Nera, M. VerSteeg, J. Corcoran, J. Cordova, W. Van Pelt, M. Shuey, J.T. Foster, J. Schupp, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, S. Smith, J. Rodriguez-Ramos, J. Williamson, P. Keim, and D. Wagner. 2013. The innate immune response may be important for surviving plague in wild Gunnison’s prairie dogs. Journal of Wildlife Diseases 49: 920-931.
Price, E.P., D.S. Sarovich, J.R. Webb, J.L. Ginther, M. Mayo, J.M. Cook, M. Seymour, M. Kaestli, V. Theobald, J.D. Busch, J.T. Foster, P. Keim, D.M. Wagner, A. Tuanyok, T. Pearson, B.J. Currie. 2013. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS One 8: e71647. DOI: 10.1371/journal.pone.0071647
Garofolo, G., F. De Massis, K. Zilli, M. Ancora, C. Cammà, P. Calistri, E. Di Giannatale, and J.T. Foster. 2013. Investigating genetic diversity of Brucella abortus and B. melitensis in Italy using MLVA-16. Infection, Genetics and Evolution 19: 59–70. DOI: 10.1016/j.meegid.2013.06.021.
Leiser, O., J.L. Corn, B. Schmit, P. Keim, and J.T. Foster. 2013. Feral swine brucellosis in the United States and prospective genetic techniques for disease epidemiology. Veterinary Microbiology 166: 1–10. DOI: 10.1016/j.vetmic.2013.02.025.
Birdsell, D.N., M. Antwerpen, P. Keim, M. Hanczaruk, J.T. Foster, J.W. Sahl, D.M. Wagner, and G. Grass. 2013. Draft genome sequences of two Bulgarian Bacillus anthracis strains. GenomeA (ASM). 1:e00152-13. DOI: 10.1128/genomeA.00152-13.
Gyuranecz, M., B. D. Rannals, C.A. Allen, S. Jánosic, P.S. Keim, and J.T. Foster. 2013. Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel. BMC Veterinary Research. 9:76. DOI: 10.1186/1746-6148-9-76.
Gyuranecz, M., J.T. Foster, H. Ip, K.F. Egstad, A. Dan, U. Höfle, P.G. Parker, J.M. Higashiguchi, M.A. Skinner, G.M. Dorrestein, B. Lucio-Martinez, S. Solt, Y.J. Kim, M. Uhart, A. Pereda, G. González Hein, J-M Blanco, and K. Erdélyi. 2013. Worldwide phylogenetic relationship of avian poxviruses. Journal of Virology 87(9):4938. DOI: 10.1128/JVI.03183-12.
2012
Foster, J.T., L.B. Price, S.M. Beckstrom-Sternberg, W.D. Brown, D.M. Kiesling, C. Allen, T. Pearson, F. Roberto, J. Beckstrom-Sternberg, and P. Keim. 2012. Genotyping of Brucella species using clade specific SNPs. BMC Microbiology 12:110. DOI:10.1186/1471-2180-12-110.
Price, E.P., M. Seymour, D. Sarovich, J. Latham, S. Wolken, J. Mason, G. Vincent, K. Drees, S. Beckstrom-Sternberg, A. Phillippy, S. Koren, R. Okinaka, W. Chung, J. Schupp, D. Wagner, R. Vipond, J.T. Foster, N. Bergman, J. Burans, T. Pearson, T. Brooks and P. Keim. 2012. Molecular epidemiologic investigation of an anthrax outbreak in heroin users, Europe. Emerging Infectious Diseases 18(8): DOI: 10.3201/eid1808.111343.
Price, E.P., J. Dale, J. Cook, D. Sarovich, M. Seymour, J. Ginther, E. Kaufman, S. Beckstrom-Sternberg, M. Mayo, M. Kaestli, M. Glass, J. Gee, V. Wuthiekanun, J.M. Warner, A. Baker, J.T. Foster, P. Tan, A. Tuanyok, D. Limmathurotsakul, S. Peacock, B. Currie, D. Wagner, P. Keim, and T. Pearson. 2012. Development and validation of Burkholderia pseudomallei real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One. 7(5): e37723. DOI:10.1371/journal.pone.0037723.
Price, L.B., M. Stegger, H. Hasman, M. Aziz, J. Larsen, P. Andersen, T. Pearson, A. Waters, J.T. Foster, J. Schupp, J. Gillece, E. Driebe, C. Liu, B. Springer, I. Zdovc, A. Battisti, A. Franco, J. Żmudzki, S. Schwarz, P. Butaye, E. Jouy, C. Pomba, C. Porrero, R. Ruimy, T. Smith, D.A. Robinson, J.S. Weese, C. Arriola, F. Yu, F. Laurent, P. Keim, R. Skov, F. Aarestrup. 2012. Staphylococcus aureus CC398: Host adaptation and emergence of methicillin resistance in livestock. mBio 3(1):e00305-11. DOI: 10.1128/mBio.00305-11.
2011
Dale, J., E.P. Price, H. Hornstra, J.D. Busch, M. Mayo, D. Godoy, V. Wuthiekanum, A. Baker, J.T. Foster, D.M. Wagner, A. Tuanyok, J. Warner, B.G. Spratt, S.J. Peacock, B.J. Currie, P. Keim, and T. Pearson. 2011. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Neglected Tropical Diseases. 5(12): e1381. DOI:10.1371/journal.pntd.0001381.
Rivarola, M., J.T. Foster (co-1st author), A.P. Chan, A.L. Williams, D. Rice, J. Liu, A. Melake-Berhan, H. Hout Creasy, D. Puiu, M.J. Rosovitz, H.M. Khouri, S.M. Beckstrom-Sternberg, G.J. Allan, P. Keim, J. Ravel and P.D. Rabinowicz. 2011. Organelle genome sequencing and worldwide genetic diversity of castor bean chloroplast genomes. PLoS One 6(7): e21743. DOI:10.1371/journal.pone.0021743.
Chanturia, G., D.N. Birdsell, M. Kekelidze, E. Zhgenti, G. Babuadze, N. Tsertsvadze, S. Tsanava, P. Imnadze, S. M. Beckstrom-Sternberg, J. S. Beckstrom-Sternberg, M. D. Champion, S. Sinari, M.Y. Gyuranecz, J. Farlow, A.H. Pettus, E.L. Kaufman, J. D. Busch, T. Pearson, J.T. Foster, A.J. Vogler, D.M. Wagner, and P. Keim. 2011. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. BMC Microbiology 11:139.
Waters, A.E., T. Contente-Cuomo, J. Buchhagen, C.M. Liu, L. Watson, K. Pearce, J.T. Foster, J. Bowers, P.S. Keim, and L.B. Price. 2011. High prevalence of multidrug resistant Staphylococcus aureus in US meat and poultry. Clinical Infectious Diseases 52:1-4. DOI: 10.1093/cid/cir181.
Davis, T.S., R.W. Hofstetter, J.T. Foster, N.E. Foote and P. Keim. 2011. Interactions between the yeast Ogataea pini and filamentous fungi associated with the western pine beetle. Microbial Ecology 61: 626-634. DOI: 10.1007/s00248-010-9773-8
Kunz, T.H., J.T. Foster, W.F. Frick, A.M. Kilpatrick, G.F. McCracken, M.S. Moore, J.D. Reichard, D. Reeder, and A.H. Robbins. 2011. White-nose syndrome: An overview of ongoing and future research needs. Pp. 189-203. In Proceedings of Protection of Threatened Bats at Coal Mines (K.C. Vories A.H. Caswell, and T.M. Price, eds). Office of Surface Mining and Coal Research Center, Southern Illinois University, Carbondale, IL.
Okinaka, R.T., K.K. Hill, T. Pearson, J.T. Foster, A. J. Vogler, A. Tuanyok, D. M. Wagner, and P. Keim. 2011. Forensic Analysis in Bacterial Pathogens, Chapter 16. In Microbial Forensics, 2nd Edition. (B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S.A. Morse, eds). Elsevier Press. Pp. 259-276.
Foster, J.T., R.L. Bull, and P. Keim. 2011. Ricin Forensics, Chapter 19. In Microbial Forensics, 2nd Edition (B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S.A. Morse, eds). Elsevier Press. Pp. 315-326.
2010
Davis, T.S., R.W. Hofstetter, K.D. Klepzig, J.T. Foster, and P. Keim. 2010. Interactions between multiple fungi isolated from two bark beetles, Dendroctonus brevicomis and D. frontalis (Coleoptera: Curculionidae). Journal of Yeast and Fungal Research. 1:118-126.
Foster, J.T., G.J. Allan, A.P. Chan, P.D. Rabinowicz, J. Ravel, P.J. Jackson, and P. Keim. 2010. Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). BMC Plant Biology 10:13
Price, E.P., H. Hornstra, D. Limmathurotsakul, A. Vogler, T. Max, D. Sarovich, J. Dale, J. Ginther, B. Leadem, R. Colman, J.T. Foster, A. Tuanyok, D. Wagner, S. Peacock, T. Pearson, and P. Keim. 2010. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathogens. 6(1): e1000725. DOI:10.1371
2009
Pearson, T., P. Giffard, S. Beckstrom-Sternberg, R. Auerbach, H. Hornstra, A. Tuanyok, M.B. Glass, B. Leadem, J.S. Beckstrom-Sternberg, G.J. Allan, J.T. Foster, et al. 2009. Accurate phylogeographic reconstruction of a bacterium species with high levels of lateral gene transfer. BMC Biology 7:78 DOI:10.1186/1741-7007-7-78
Pearson, T., R.T. Okinaka, J.T. Foster, and P. Keim. 2009. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infection, Genetics & Evolution 9:1010-19.
Foster, J.T., S.M. Beckstrom-Sternberg, T. Pearson, J. Beckstrom-Sternberg, P. Chain, F. Roberto, J. Burans, and P. Keim. 2009. Whole genome phylogeny and origins of the genus Brucella. Journal of Bacteriology. 191: 2864-2870
Kenefic, L., T. Pearson, R. Okinaka, J. Schupp, D. Wagner, J. Ravel, A. Hoffmaster, C. Trim, W. Chung, J. Beaudry, J.T. Foster, J. Mead, and P. Keim. 2009. Pre-Columbian origins for North American anthrax. PLoS ONE. 4: e4813. DOI:10.1371/journal.pone.0004813.
Reding, D.M., J.T. Foster, H. James, H.D. Pratt and R.C. Fleischer. 2009. Convergent evolution of “creepers” in the Hawaiian honeycreeper radiation. Biology Letters. 5:221-224. * Chosen by the editor as one of top papers of the year for 2009.
Foster, J.T. 2009. The history and impacts of exotic birds in the Hawaiian Islands. Chapter 13 in T.K. Pratt, C.T. Atkinson, P.C. Banko, J.D. Jacobi, and B.L. Woodworth, eds. Conservation biology of Hawaiian Forest Birds. Yale University Press, New Haven, CT.
2008 and before
Foster, J.T., R.T. Okinaka, R. Svensson, K. Shaw, B.K. De, R. Robison, W. Probert, L. Kenefic, W. Brown, and P. Keim. 2008. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. Journal of Clinical Microbiology 46: 296-301.
Malcolm, T.R., K.J. Swinnerton, J.J. Groombridge, B.D. Sparklin, C.N. Brosius, J.P. Vetter, and J.T. Foster. 2008. Ground-based rodent control in a remote Hawaiian rainforest on Maui. Pacific Conservation Biology 14:206-214.
Schmidt, B.K., J.T. Foster, G.R. Angehr, K.L. Durrant, and R.C. Fleischer. 2008. A new species of African Forest Robin from Gabon (Passeriformes: Muscicapidae: Stiphrornis). Zootaxa 1850: 27-42.
Foster, J.T., B.L. Woodworth, P.J. Hart, L.E. Eggert, D. Palmer, D.C. Duffy, and R.C. Fleischer. 2007. Genetic structure and evolved malaria resistance in Hawaiian honeycreepers. Molecular Ecology 16:4738-4746.
Foster, J.T. and S. K. Robinson. 2007. Introduced birds and the fate of Hawaiian rainforests. Conservation Biology 21:1248–1257.
Runde, D. E., W.C. Pitt, and J.T. Foster. 2007. Population ecology and potential impacts of emerging populations of exotic parrots. Managing Vertebrate Invasive Species: Proceedings of an International Symposium (G.W. Witmer, W.C. Pitt, K. A. Fagerstone, Eds). USDA/APHIS/WS, National Wildlife Research Center, Fort Collins, CO.
Tweed, E.J., J.T. Foster, B.L. Woodworth, W.B. Monahan, and J.L. Kellerman. 2006. Breeding biology and success of a reintroduced population of the critically endangered Puaiohi (Myadestes palmeri). Auk 123:753-763.
Foster, J.T., E.J. Tweed, R.J. Camp, B.L. Woodworth, C.D. Adler, and T. Telfer. 2004. Long-term population changes of native and introduced birds in the Alaka'i Swamp, Kaua'i. Conservation Biology 18:716-725.
Tweed, E.J., J.T. Foster, B.L. Woodworth, P. Oesterle, C. Kuehler, and A. Lieberman. 2003. Survival, dispersal, and home-range establishment of captive-raised Puaiohi. Biological Conservation 111:1-9.
Foster, J.T., J.M. Scott, and P.W. Sykes. 2000. ‘Akikiki (Oreomystis bairdi) In The Birds of North America, No. 552 (A. Poole and F. Gill, eds.). The Birds of North America Inc., Philadelphia, PA.
Janke, N.R., C.H.D. Williamson, K.P. Drees, M. Suárez-Esquivel, A.R. Allen, J.T. Ladner, C.R. Quance, S. Robbe-Austerman, D. O’Callaghan, A.M. Whatmore, and J.T. Foster. 2023. Global genomic diversity of Brucella abortus: spread of a dominant lineage. Frontiers in Microbiology 14: 1287046 doi: 10.3389/fmicb.2023.1287046
Seidl, C., F. C. Ferreira, K.L. Parise, K.L. Paxton, E.H. Paxton, C.T. Atkinson, R.C. Fleischer, J.T. Foster, and A.M. Kilpatrick. 2023. Linking avian malaria parasitemia estimates from qPCR and microscopy reveals new infection patterns in Hawai'i. International Journal for Parasitology doi: 10.1016/j.ijpara.2023.10.001
Gabrielson, S.M.E., R. L. Mau, E. Dittmar, J.P. Kelley, C.E. Tarwater, D.R. Drake, J.H. Sperry, and J.T. Foster. 2023. DNA metabarcoding reveals diet composition of invasive rats and mice in Hawaiian forests. Biological Invasions. doi: 10.1007/s10530-023-03159-4
Ange-Stark, M., K.L. Parise, K.E. Langwig, J.R. Hoyt, T.L. Cheng, W. F. Frick, A.M. Kilpatrick, J. Gillece, M.D. MacManes, J.T. Foster. 2023. White-nose syndrome restructures bat skin microbiomes. Microbiology Spectrum doi: 10.1128/spectrum.02715-23
Moreno, E., E. A. Middlebrook, P. Altamirano-Silva, S. Dahouk, G. Araj, V. Arce-Gorvel, Á. Arenas-Gamboa, J. Ariza, E. Barquero-Calvo, G. Battelli, W. Bertu, J. Blasco, M. Bosilkovski, S. Cadmus, C. Caswell, J. Celli, C. Chacón-Díaz, E. Chaves-Olarte, D. Comerci, R. Conde-Álvarez, E. Cook, S. Cravero, M. Dadar, X. Boelle, F. Massis, R. Díaz, G. Escobar, L. Fernández-Lago, T. Ficht, J. T. Foster, B. Garin-Bastuji, J. Godfroid, J.-P. Gorvel, L. Güler, S. Erdenliğ-Gürbilek, A. Gusi, C. Guzmán-Verri, J. Hai, G. Hernández-Mora, M. Iriarte, N. Jacob, A. Keriel, M. Khames, S. Köhler, J.-J. Letesson, M. Loperena-Barber, I. López-Goñi, J. McGiven, F. Melzer, R. Mora-Cartin, J. Moran-Gilad, P. Muñoz, H. Neubauer, D. O'Callaghan, R. Ocholi, Á. Oñate, P. Pandey, G. Pappas, J. Pembroke, M. Roop, N. Ruiz-Villalonos, M. Ryan, S. Salcedo, M. Salvador-Bescós, F. Sangari, R. d.L. Santos, A. Seimenis, G. Splitter, M. Suárez-Esquivel, D. Tabbaa, M. Trangoni, R. Tsolis, N. Vizcaíno, G. Wareth, S. Welburn, A. Whatmore, A. Zúñiga-Ripa, and I. Moriyón. 2023. If you're not confused, you're not paying attention: Ochrobactrum is not Brucella. Journal of Clinical Microbiology 61:e00438-023. doi: 10.1128/jcm.00438-23
Laggan, N., K.L. Parise, J.P. White, H. Kaarakka, J. Redell, J. DePue, W. Scullon, J. Kath, J.T. Foster, A.M. Kilpatrick, Kilpatrick, K.E. Langwig, J. Hoyt. 2023. Host infection dynamics and disease-induced mortality modify species contributions to the environmental reservoir. Ecology. doi: 10.1002/ecy.4147
Pereira. C.R., R.C. Neia, S.B. Silva, C.H.D. Williamson, J.D. Gillece, D. O'Callaghan, J.T. Foster, I.R.C. Oliveira, J.S.S.B. Filho, A.P. Lage, V.A.C. Azevedo, E.M.S. Dorneles. 2023. Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution. Journal of Microbiological Methods 106772. doi: 10.1016/j.mimet.2023.106772
Szentiványi, T., C. McKee, G. Jones, and J.T. Foster. 2023. Trends in bacterial pathogens of bats: global distribution and knowledge gaps. Transboundary and Emerging Diseases 9285855. doi: 10.1155/2023/9285855
Rodrigues Pereira, C., R. Kato, F.A. Araújo, A. Lima, R.G. dos Santos, T. d. J. Sousa, R.C. Neia, S.B. da Silva, C.H.D. Williamson, J. Gillece, A.P. Lage, D. O’Callaghan, D. Pickard, G. Dougan, R.T. Juca Ramos, V.A. Azevedo, J.T. Foster, and E.M.S. Dorneles. 2023. Genomic investigation of antimicrobial resistance in Brucella abortus strains isolated from cattle in Brazil. Gene Reports. 31: 101777 doi: 10.1016/j.genrep.2023.101777
Kailing, M. J., J. R. Hoyt, J. P. White, H. M. Kaarakka, J. A. Redell, A. E. Leon, T. E. Rocke, J. E. DePue, W. H. Scullon, K. L. Parise, J. T. Foster, A. M. Kilpatrick, and K. E. Langwig. 2023. Sex-biased infections scale to population impacts for an emerging wildlife disease. Proceedings of the Royal Society B: Biological Sciences 290:20230040. doi: 10.1098/rspb.2023.0040
Langwig, K. E., A. M. Kilpatrick, M. J. Kailing, N. Laggan, J. P. White, H. M. Kaarakka, J. A. Redell, J. E. DePue, K. L. Parise, J. T. Foster, and J. R. Hoyt. 2023. Shifting effects of host physiological condition following pathogen establishment. Biology Letters 19: 20220574 doi: 10.1098/rsbl.2022.0574
Hoyt, J.R., K.L. Parise, J.E. DePue, H.M. Kaarakka, J.A. Redell, W.H. Scullon, R. O’Reskie J.T. Foster, A.M. Kilpatrick, K.E. Langwig, J.P. White. 2023. Reducing environmentally mediated transmission to moderate impacts of an emerging wildlife disease. Journal of Applied Ecology. doi: 10.1111/1365-2664.14371
Neddermeyer, J.H., K.L. Parise, A.M. Kilpatrick, and J.T. Foster. 2023. Nowhere to fly: Ubiquitous avian malaria from ocean to summit on a Hawaiian island. Biological Conservation 279: 109943. doi: 10.1016/j.biocon.2023.109943
Rodrigues Pereira, C., T. d. J. Sousa, A. L. da Silva, R. Gonçalves dos Santos, D. A. Costa Custódio, D. J. J. Pickard, D. O’Callaghan, J. T. Foster, S. d. C. Soares, R. T. J. Ramos, A. Góes-Neto, M. M. da Costa, A. P. Lage, V. Azevedo, and E. M. S. Dorneles. 2023. First report and whole-genome sequencing of Pseudochrobactrum saccharolyticum in Latin America. Microbes and Infection 25: 105018. doi: 10.1016/j.micinf.2022.105018
Foster, J.T., T. Pearson, P. Keim. 2023. Genomic microbiology as applied to animal forensics. The Microbiologist 563. Applied Microbiology International Feature of Forensic Microbiology Issue
Caswell, C., A. Arenas-Gamboa, and J.T. Foster. 2023. Chapter 16 Brucella in Pathogenesis of Bacterial Infections in Animals: 5th edition. (Prescott, J. F., MacInnes, J. I., Van Immerseel, F., Boyce, J. D., Rycroft, A. N, J. Vázquez-Boland, eds.) Wiley-Blackwell. ISBN: 978-1-119-75486-2
2022
Navine, A.K., K.L. Paxton, E.H. Paxton, P.J. Hart, J.T. Foster, N. McInerney, R.C. Fleischer, and E. Videvall. 2022. Different cloacal bacteria associated with avian malaria survival in susceptible Hawaiian honeycreeper than sympatric malaria-resistant bird. Molecular Ecology doi: 10.1111/mec.16743
Souza-Cole, I., M.P. Ward, R.L. Mau, J.T. Foster, and T.J. Benson. 2022. Eastern Whip-poor-will abundance is influenced by urban land cover and moth abundance. Ornithological Applications. doi: 10.1093/ornithapp/duac032
Vizentin-Bugoni, J., J. H. Sperry, J.P. Kelley, J.T. Foster, D.R. Drake, S.B. Case, J.M. Gleditsch, A.M. Hruska, R.C. Wilcox, C.E. Tarwater. 2022. Mechanisms underlying interaction frequencies and robustness of a novel seed dispersal network in Hawaii. Proceedings Royal Society B. 289: 20221490. doi: 10.1098/rspb.2022.1490
O’Rourke, D., N.P. Rouillard, K.L. Parise, J.T. Foster. 2022. From forest to barn: molecular diet analyses of New Hampshire bats reveal variation in prey consumption across space and time. Scientific Reports 12: 14334 doi: 10.1038/s41598-022-17631-z
Case, S.B., K. Postelli, D.R. Drake, J. Vizentin-Bugoni, J.T. Foster, J.H. Sperry, J.P. Kelley, and C.E. Tarwater. 2022. Introduced galliforms as seed predators and dispersers in Hawaiian forests. Biological Invasions. doi: 10.1007/s10530-022-02830-6
Frick, W.F., E. Johnson, T.L. Cheng, J.S. Lankton, R. Warne, J. Dallas, K.L. Parise, J.T. Foster, J.G. Boyles, L.P. McGuire. 2022. Experimental inoculation trial to determine the effects of temperature and humidity on the fungal pathogen that causes white-nose syndrome in hibernating bats. Scientific Reports. 12: 971. doi: 10.1038/s41598-022-04965-x
Maslo, B., R. L. Mau, K. Kerwin, R. McDonough, E. McHale, and J. T. Foster. 2022. Bats provide a critical biodiversity-based ecosystem service by consuming a large diversity of agricultural pest insects. Agriculture, Ecosystems and Environment. 324: 107722 doi: 10.1016/j.agee.2021.107722
2021
Robeson, M., B. Kaehler, M. Dillon, D.R. O’Rourke, J.T. Foster, N.A. Bokulich. 2021. Automated and extensible marker gene sequence and reference database management with RESCRIPt. PLoS Computational Biology. 17(11): e1009581. doi: 10.1371/journal.pcbi.1009581
Yang, Y., J.T. Foster, M. Yi, L. Zhan, Y. Zhang, B. Zhou, J. Jiang, and L. Mei. 2021. Phenotypic homogeneity of emetic Bacillus cereus isolates in China. Letters in Applied Microbiology doi: 10.1111/lam.13527
Bechtel, M.J., K.K. Drake, T.C. Esque, N.C. Nieto, J.T. Foster, and M.B. Teglas. Borreliosis transmission from ticks associated with desert tortoise burrows: examples of tick-borne relapsing fever in the Mojave Desert. Vector-borne and Zoonotic Diseases. doi: 10.1089/vbz.2021.0005
Cassin-Sackett, L., M.G. Campana, N.R. McInerney, H.C. Lim, N.A.S. Przelomska, B. Masuda, R.T. Chesser, E.H. Paxton, J.T. Foster, L.H. Crampton, and R. C. Fleischer. 2021. Genetic structure and population history in two critically endangered Kauai honeycreepers. Conservation Genetics. doi: 10.1007/s10592-021-01382-x
Ridenour, C.L., J. Cocking, S. Poidmore, D. Erickson, B. Brock, M. Valentine, C. Roe, S Young, J. Henke, K.Y Hung, J. Wittie, E. Stefanakos, C. Sumner, M. Rueda, V. Raman, N. Seaton, W. Bendik, H.M. Hornstra O’Neill, K. Sheridan, H. Centner, D. Lemmer, V. Fofanov, K. Smith, J. Will, J. Townsend, J.T. Foster, P.S. Keim, D.M. Engelthaler, and C.M. Hepp. 2021. St. Louis Encephalitis Virus in the Southwestern United States: a phylogeographic case for a multi-variant introduction event. Frontiers in Genetics. 12:837 doi: 10.3389/fgene.2021.667895
Suárez-Esquivel, M., N. Ruiz-Villalobos, W. Hidalgo-Jara, C. Chacón-Díaz, A.M. Zúñiga-Pereira, M. Masís-Mora, E. Fernández-Fernández, G. Hernández-Mora, E. Barquero-Calvo, E. Chaves-Olarte, N.R. Thomson, J.T. Foster, E. Moreno and C. Guzmán Verri. 2021. Canine brucellosis in Costa Rica reveals widespread Brucella canis infection and the recent introduction of foreign strains. Veterinary Microbiology. 257:109072. doi: 10.1016/j.vetmic.2021.109072
Whatmore, A.M. and J.T. Foster. 2021. Emerging genetic diversity of Brucella: implications for taxonomy, typing and molecular epidemiology. Infection, Genetics and Evolution 92:104865. doi: 10.1016/j.meegid.2021.104865
Langwig, K.E., J.P. White, K.L. Parise, H.M. Kaarakka, J.A. Redell, J.E. DePue, W.H. Scullon, J.T. Foster, A.M. Kilpatrick, J.R. Hoyt. 2021. Tradeoffs between mobility and infectiousness in the spatial spread of an emerging pathogen. Journal of Animal Ecology. doi: 10.1111/1365-2656.13439
Knight, E.C., A-L. Harrison, A.L. Scarpignato, S.L. Van Wilgenburg, E.M. Bayne, J. Ng, E. Angell, R. Bowman, M. Brigham, B. Drolet, W. Easton, T. Forrester, J.T. Foster, S. Haché, K. Hannah, J. Ibarzabal, T. Imlay, S. MacKenzie, L. McGuire, G. Newberry, D. Newstead, A. Sidler, D. Swanson, P. Sinclair, J. Stephens, P. Thomas, J. Tremblay, P.P. Marra. 2021. A comprehensive approach to estimating migratory connectivity across the annual cycle reveals peaks in spatial and temporal connectivity that can direct conservation efforts. Ecography. 44:1-15. doi: 10.1111/ecog.05111
O’Rourke, D., M.T. Mangan, K.E. Mangan, N.A. Bokulich, M.D. MacManes, and J.T. Foster. 2021. Lord of the Diptera (and moths and a spider): molecular diet analyses of Indiana bats in Illinois. Frontiers in Ecology and Evolution. 9: 623655. doi: 10.3389/fevo.2021.623655
van Dijk, J.G.B., S.A. Iverson, H.G. Gilchrist, N.J. Harms, H. Hennin, O.P. Love, I.I. Buttler, S. Lesceu, J.T. Foster, M.R. Forbes, and C. Soos. 2021. Herd immunity drives the epidemic fadeout of avian cholera in Arctic-nesting seabirds. Scientific Reports. 11:1046. doi: 10.1038/s41598-020-79888-6
Vizentin-Bugoni, J., J.H. Sperry, J.P. Kelley, J.M. Gleditsch, J.T. Foster, D.R. Drake, A.M. Hruska, R. Wilcox, S. Case, C.E. Tarwater. 2021. Ecological correlates of species’ roles in highly invaded seed dispersal networks. Proceedings of the National Academy of Sciences USA. 118 (4): e2009532118 doi: 10.1073/pnas.2009532118
2020
Janowicz, A., K. Zilli, M. Ancora, M. Tittarelli, F. Sacchini, E. Di Giannatale, J.W. Sahl, J.T. Foster, G. Garofolo. 2020. Evolutionary history and current distribution of West Mediterranean lineage of Brucella melitensis in Italy. Microbial Genomics. 6(11). doi: 10.1099/mgen.0.000446
Rouzic, N., L. Desmier, M-E. Cariou, E. Gay, J.T. Foster, C.H.D. Williamson, F. Schmitt, M. Le Henaff, A. Le Coz, A. Lorléac’h, J-P. Lavigne, D. O’Callaghan and A. Keriel. 2020. First case of human brucellosis caused by an amphibian-type Brucella sp. Clinical Infectious Diseases. doi: 10.1093/cid/ciaa1082
O’Rourke, D., N.A. Bokulich, M.D. MacManes, and J.T. Foster. 2020. A total crapshoot? evaluating bioinformatic decisions in animal diet metabarcoding analyses. Ecology & Evolution. doi: 10.1002/ece3.6594
Ineson, K., T.J. O'Shea, C.W. Kilpatrick, K.L. Parise, and J.T. Foster. 2020. Ambiguities in using telomere length for age determination in two North American bat species. Journal of Mammalogy. doi: 10.1093/jmammal/gyaa064
Suárez-Esquivel, M., G Hernández-Mora, N. Ruiz-Villalobos, E. Barquero-Calvo, C. Chacón-Díaz, J.T. Ladner, G. Oviedo-Sánchez, J.T. Foster, N. Rojas-Campos, E. Chaves-Olarte, N.R. Thomson, E. Moreno and C. Guzmán-Verri. 2020. Persistence of Brucella abortus lineages revealed by genomic characterization and phylotemporal analysis. PLoS Neglected Tropical Diseases 14(4): e0008235. doi: 10.1371/journal.pntd.0008235
Hoyt, J.R., K.E. Langwig, K. Sun, K.L. Parise, A. Li, Y. Wang, X. Huang, L. Worledge, H. Miller, J.P. White, H. Kaarakka, J. Redell, T. Görföl, S. A. Boldogh, D. Fukui, M. Sakuyama, S. Yachimori, A. Sato, M. Dalannast, A. Jargalsaikhan, N. Batbayar, Y. Yovel, E. Amichai, I. Natradze, W.F. Frick, J.T. Foster, J. Feng, and A.M. Kilpatrick. 2020. Environmental reservoir dynamics predict global infection patterns and population impacts for the fungal disease white-nose syndrome. Proceedings of the National Academy of Sciences USA. 117: 7255-7262 doi: 10.1073/pnas.1914794117
Pearson, T., J.W. Sahl, C.M. Hepp, K. Handady, H. Hornstra, A.J. Vazquez, E. Settles, M. Mayo, M. Kaestli, C.H. Williamson, E.P. Price, D.S. Sarovich, J.M. Cook, S. Wolken, R.A. Bowen, A. Tuanyok, J.T. Foster, K.P. Drees, T.J. Kidd, S.C. Bell, B.J. Currie, and P. Keim. 2020. Pathogen to commensal: longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. PLoS Pathogens. 16: e1008298. doi: 10.1371/journal.ppat.1008298
Allen, A., G. Milne, K. Drees, E. Breadon, J. Graham, P. McAdam, K. Jones, L. Wright, R. Skuce, A. Whatmore, and J.T. Foster. 2020. Genomic epizoology of a Brucella abortus outbreak in Northern Ireland. Infection, Genetics and Evolution. 81: 104235. doi: 10.1016/j.meegid.2020.104235
Keim, P., J.W. Sahl, T. Pearson, A. Vogler, C.H. Williamson, D. Birdsell, R.T. Okinaka, J.T. Foster, D.M. Wagner. 2020. Forensic analysis in
bacterial pathogens, Chapter 9. In Microbial Forensics, 3rd edition (B. Budowle, S. A. Morse and S. Schutzer, eds). Elsevier Press. Pp. 123-140. doi: 10.1016/B978-0-12-815379-6.00009-X
Foster, J.T., R.L. Bull, and P. Keim. 2020. Chapter 16. Ricin Forensics: Comparisons to Microbial Forensics. In Microbial Forensics, 3rd edition (B. Budowle, S. A. Morse and S. Schutzer, eds). Elsevier Press. Pp. 241-250. doi: 10.1016/B978-0-12-815379-6.00016-7
2019
Hoyt, J.R., K.E. Langwig, J.P. White, J.A. Redell, H.M. Kaarakka, K.L. Parise, W.F. Frick, J.T. Foster, A.M. Kilpatrick. 2019. Field trial of a probiotic bacteria to protect bats from white-nose syndrome. Scientific Reports 9:9158. doi: 10.1038/s41598-019-45453-z
Vizentin-Bugoni, J., C.E. Tarwater, J.T. Foster, D.R. Drake, J.M. Gleditsch, A.M. Hruska, J.P. Kelley, J.H. Sperry. 2019. Structure, spatial dynamics, and stability of novel mutualistic networks. Science. 364: 78–82. doi: 10.1126/science.aau8751
Huebschman, J.J., S.A. Hoerner, J.P. White, H.M. Kaarakka, K.L. Parise, and J.T. Foster. 2019. Detection of Pseudogymnoascus destructans during summer on Wisconsin bats. Journal of Wildlife Diseases. 55: . doi: 10.7589/2018-06-146
Warren, C.C., L.K. Berthold, H.L. Mounce, J.T. Foster, L.C. Sackett. 2019. Evaluating the risk of avian disease in reintroducing the endangered Kiwikiu (Maui Parrotbill: Pseudonestor xanthophrys) to Nakula NAR, Maui, Hawai‘i. Pacific Cooperative Studies Unit Technical Report #201. University of Hawai`i at Mānoa, Department of Botany. Honolulu, HI. 50 pp. PSCU 10125/68734
2018
Hoyt, J.R., K.E. Langwig, J.P. White, H.M. Kaarakka, J. Redell, A. Kurta, J. DePue, W. Scullon, K.L. Parise, J.T. Foster, W.F. Frick, and A.M. Kilpatrick. 2018. Cryptic connections illuminate pathogen transmission within community networks. Nature 563:710-713. doi: 10.1038/s41586-018-0720-z
Koster, K. J., A. Largen, J. T. Foster, K. P. Drees, L. Qian, E. Desmond, X. Wan, S. Hou, and J. T. Douglas. 2018. Genomic sequencing is required for identification of tuberculosis transmission in Hawaii. BMC Infectious Diseases 18:608. doi: 10.1186/s12879-018-3502-1
Dool, S., A. Altewischer, N.M. Fischer, K.P. Drees, J.T. Foster, M. Fritze, and S.J. Puechmaille. 2018. Mating type determination within a microsatellite multiplex for the fungal pathogen Pseudogymnoascus destructans, the causative agent of white-nose disease in bats. Conservation Genetics Resources doi: 10.1007/s12686-018-1064-6
Koster, K., A. Largen, J.T. Foster, K.P. Drees, L. Qian, E.P. Desmond, X. Wan, S. Hou, J.T. Douglas. 2018. Whole genome SNP analysis suggests unique virulence factor differences of the Beijing and Manila families of Mycobacterium tuberculosis found in Hawaii. PLoS One 13: e0201146 doi: 10.1371/journal.pone.0201146
Foster, J.T., F.M. Walker, B.D. Rannals, R. Tiller, A. Hoffmaster, P. Keim, and M. Saqib. 2018. African lineage of Brucella melitensis in Omani livestock. Frontiers in Microbiology 8: 2702. doi: 10.3389/fmicb.2017.02702
Palmer, J.M., K.P. Drees, J.T. Foster, D.L. Lindner. 2018. Shining light on white-nose syndrome of bats: extreme sensitivity to ultra-violet light in Pseudogymnoascus destructans. Nature Communications doi: 10.1038/s41467-017-02441-z
Foster, J.T., F. Walker, B. Rannals, and D. Sanchez. 2018. Population genetics of an island invasion by Japanese Bush-Warblers in Hawaii, USA. The Auk 135: doi: 10.1642/AUK-17-120.1
Moore, M., K. Field, M. Behr, G. Turner, M. Furze, D. Stern, P. Allegra, S. Bouboulis, C. Musante, M. Vodzak, M. Biron, M. Meierhofer, W. Frick, J.T. Foster, D. Howell, J. Kath, A. Kurta, G. Nordquist, J. Johnson, T. Lilley, B. Barrett, D. Reeder. 2018. Energy conserving thermoregulatory patterns and lower disease severity in a bat resistant to the impacts of white-nose syndrome. Journal of Comparative Physiology B 1-14. doi: 10.1007/s00360-017-1109-2
2017
Drees, K.P., J.M. Lorch, S.J. Puechmaille, K. Parise, G. Wibbelt, J.R. Hoyt, K. Sun, A. Jargalsaikhan, M. Dalannast, J. Palmer, D.L. Lindner, A.M. Kilpatrick, T. Pearson, P.S. Keim, D.S. Blehert, and J.T. Foster. 2017. Phylogenetics of a fungal invasion: Origins and widespread dispersal of white-nose syndrome. mBio 8: e01941-17. doi: 10.1128/mBio.01941-17
Bernard, R.F., E.V. Willcox, J.T. Foster, K. L. Parise, and G.F. McCracken. 2017. White-nose syndrome fungus, Pseudogymnoascus destructans, on bats captured emerging from caves during winter in the southeastern United States. BMC Zoology 2:12. doi: 10.1186/s40850-017-0021-2
Campana, M.G, N.P. Kurata, J.T. Foster, R.C. Fleischer, and K.M. Helgen. 2017. Detection of the earliest known Pseudogymnoascus destructans infection in a French bat from 1918. Emerging Infectious Diseases 23:1611-1612. doi:10.3201/eid2309.170875
Gleditsch, J.M., A.M. Hruska, and J.T. Foster. 2017. Temporal tracking of resources and the implications for seed Dispersal. Frontiers in Ecology and Evolution 5:98. doi: 10.3389/fevo.2017.00098
Drees, K.P., K.L. Parise, S. Rivas, L.L. Felton, S. Puechmaille, P. Keim, and J.T. Foster. 2017. Characterization of microsatellites to distinguish Pseudogymnoascus destructans isolates for white-nose syndrome genetic analysis. Journal of Wildlife Diseases. In press. doi: 10.7589/2016-09-217
Al Dahouk, S., S. Köhler, A. Occhialini, M.P. Jiménez de Bagüés, J.A. Hammerl, T. Eisenberg, G. Vergnaud, A. Cloeckaert, M.S. Zygmunt, A.M. Whatmore, F. Melzer, K.P. Drees, J.T. Foster, A.R. Wattam, and H.C. Scholz. 2017. Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts. Scientific Reports 7:44420. doi: 10.1038/srep44420
Mahoney, S.M., T.C. Theimer, M.J. Johnson, and J.T. Foster. 2017. Similar dietary but different numerical responses to nonnative tamarisk by two native warblers. Biological Invasions. doi: 10.1007/s10530-017-1408-2
Frick, W.F., T.L. Cheng, K.E. Langwig, J.R. Hoyt, A. Janicki, K. Parise, J.T. Foster, and A.M. Kilpatrick. 2017. Pathogen dynamics during invasion and establishment of white-nose syndrome explain mechanisms of host persistence. Ecology 98:624–631. doi: doi: 10.1002/ecy.1706
Garofolo, G., E. Di Giannatale, I. Platone, K. Zilli, L. Sacchini, A. Abass, G. Di Donato, M. Ancora, C. Cammà, F. De Massis, P. Calistri, K.P. Drees and J.T. Foster. 2017. Origins and global context of Brucella abortus in Italy. BMC Microbiology 17:28. doi: 10.1186/s12866-017-0939-0
Langwig, K.E., J.R. Hoyt, K.L. Parise, W.F. Frick, J.T. Foster, and A.M. Kilpatrick. 2017. Resistance in persisting bat populations after white-nose syndrome invasion. Philosophical Transactions of the Royal Society B. 372: 20160044. doi: 10.1098/rstb.2016.0044
Cheng, T.L., H. Mayberry, L.P. McGuire, J.R. Hoyt, K.E. Langwig, H. Nguyen, K.L. Parise, J.T. Foster, C.K.R. Willis, A.M. Kilpatrick, W.F. Frick. 2017. Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome. Journal of Applied Ecology doi: 10.1111/1365-2664.12757
2016
Avena, C., L. Parfrey, J. Leff, H. Archer, W. Frick, K. Langwig, A.M. Kilpatrick, K. Powers, J.T. Foster, and V. McKenzie. 2016. Deconstructing the bat skin microbiome: influences of the host and the environment. Frontiers in Microbiology 7:1753. doi: 10.3389/fmicb.2016.01753
Langwig, K.E., W.F. Frick, J.R. Hoyt, K.L. Parise, K.P. Drees, T.H. Kunz, J.T. Foster, A.M. Kilpatrick. 2016. Drivers of variation in species impacts for a multi-host fungal disease of bats. Philosophical Transactions of the Royal Society B 371: 20150456. doi: 10.1098/rstb.2015.0456
Vogler, A.J., R. Nottingham, J. Busch, J. Sahl, M. Shuey, J.T. Foster, J. Schupp, S. Smith, T. Rocke, P. Keim, and D.M. Wagner. 2016. VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation. Infection, Genetics & Evolution 45: 297-302 doi: 10.1016/j.meegid.2016.09.019
Cheng, T.L., H. Mayberry, L.P. McGuire, J.R. Hoyt, K.E. Langwig, H. Nguyen, K.L. Parise, J.T. Foster, C.K.R. Willis, A.M. Kilpatrick, W.F. Frick. 2016. Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome. Journal of Applied Ecology. doi: 10.1111/1365-2664.12757
Lorch, J.M., J. Palmer, D. Lindner, A. Ballmann, K.G. George, K. Griffin, S. Knowles, J. Huckabee, K.H. Haman, C.D. Anderson, P.A. Becker, J.B. Buchanan, J.T. Foster, and D.S. Blehert. 2016. First detection of bat white-nose syndrome in western North America. mSphere 1: e00148-16. doi: 10.1128/mSphere.00148-16
Drees, K.P., J. Palmer, R. Sebra, J. Lorch, C. Chen, C. Wu, J.W. Bok, N. Keller, D.S. Blehert, C. Cuomo, D. Lindner, and J.T. Foster. 2016. Use of multiple sequencing technologies to produce a high quality genome of the fungus Pseudogymnoascus destructans, the causative agent of bat white-nose syndrome. Genome Announcements 4: e00445-16. doi:10.1128/genomeA.00445-16
Kamath, P. L., J. T. Foster, K. P. Drees, G. Luikart, C. Quance, N. J. Anderson, P. R. Clarke, E. K. Cole, M. L. Drew, W. H. Edwards, J. C. Rhyan, J. J. Treanor, R. L. Wallen, P. J. White, S. Robbe-Austerman, and P. C. Cross. 2016. Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock. Nature Communications 7:11448 doi:10.1038/ncomms11448
Blanchong, J.A., S.J. Robinson, M.D. Samuel, and J.T. Foster. 2016. Application of genetics and genomics to wildlife epidemiology. Journal of Wildlife Management. 80:593-608 doi: 10.1002/jwmg.1064
Hammond, R.L., L.H. Crampton, and J.T. Foster. 2016. Nesting success of native and introduced forest birds on the island of Kaua‘i. Journal of Avian Biology 47:252-262 doi: 10.1111/jav.00763
Williamson, C.H.D., J.W. Sahl, T.J. Smith, G. Xie, B.T. Foley, L.A. Smith, R. Fernandez, M. Lindstrom, H. Korkeala, P. Keim, J.T. Foster, and K. Hill. 2016. Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing clostridia. BMC Genomics 17:180
doi:10.1186/s12864-016-2502-z
McGuire, L.P., L. Warnecke, J.M. Turner, G. McGregor, T.K. Bollinger, V. Misra, J.T. Foster, W.F. Frick, A.M. Kilpatrick, and C.K.R. Willis. 2016. White-nose syndrome disease severity and a comparison of diagnostic methods. EcoHealth. doi: 10.1007/s10393-016-1107-y
Hoyt, J.R., K.E. Langwig, K. Sun, G. Lu, K. Parise, T. Jiang, W. Frick, J.T. Foster, J. Feng, A.M. Kilpatrick. 2016. Host persistence or extinction from emerging infectious diseases: insights from endemic and invading regions. Proceedings Royal Society B. 283: 20152861. doi: 10.1098/rspb.2015.2861
Garner, B.A., B.K. Hand, B. Addis, S. Amish, L. Bernatchez, J.T. Foster, K.M. Miller, S.R. Narum, J. Seeb, L. Seeb, W.D. Templin, P. Sunnucks, J. Strait, K.I. Warheit, T.R. Seamons, J. Wenburg, J. Olsen, G. Luikart. 2016. Genomics in conservation: case studies for bridging the gap from data to application. Trends in Ecology & Evolution. S0169-5347(15)00272-4. doi: 10.1016/j.tree.2015.10.009
Hoyt, J.R., K. Sun, K.L. Parise, G. Lu, K.E. Langwig, T. Jiang, S. Yang, W.F. Frick, A.M. Kilpatrick, J.T. Foster, and J. Feng. 2016. Widespread occurrence of Pseudogymnoascus destructans in northeast China: implications for the global distribution of white-nose syndrome. Emerging Infectious Diseases 22(1):140-142 doi:10.3201/eid2201.151314
2015
Garofolo, G., J.T. Foster, K. Drees, K. Zilli, I. Platone, M. Ancora, C. Cammà, F. De Massis, P. Calistri, and E. Di Giannatale. 2015. Genome sequences of eleven Brucella abortus isolates from persistently infected Italian regions. Genome Announcements. 3(6): e01402-15. doi: 10.1128/genomeA.01402-15
Leiser, O.P., E.D. Merkley, B.H. Clowers, B.L. Deatherage Kaiser, J.R. Hutchison, D.W. Wagner, P. Keim, J.T. Foster, and H. Kreuzer. 2015. Investigation of Yersinia pestis laboratory adaptation through a combined genomics and proteomics approach. PLoS One 10(11):e0142997. doi:10.1371/journal.pone.0142997
Foster, J.T., T. Pearson, P. Keim. 2015. Genomic microbiology as applied to animal forensics. Microbiologist 16:14-17. September issue Society for Applied Microbiology
Janicki, A.F., W.F. Frick, A.M. Kilpatrick, K.L. Parise, J.T. Foster, and G.F. McCracken. 2015. Efficacy of visual surveys for white-nose syndrome at bat hibernacula. PLoS One 10: e0133390. doi: 10.1371/journal.pone.0133390
Rónai, Z., Z. Kreizinger, A. Dán, K. Drees, J.T. Foster, K. Bányai, S. Marton, L. Szeredi, S. Jánosi, and M. Gyuranecz. 2015. First isolation and characterization of Brucella microti from wild boar. BMC Veterinary Research 11:147 doi:10.1186/s12917-015-0456-z
Olson, N.D., S.P. Lund, R. Colman, J.T. Foster, J.W. Sahl, J.M. Schupp, P. Keim, J.B. Morrow, M. Salit, and J.M. Zook. 2015. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Frontiers in Genetics 6:235. doi:0.3389/fgene.2015.00235
Sahl, J.W., J.M. Schupp, D.A. Rasko, R. Colman, J.T. Foster, and P. Keim. 2015. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Medicine 7:52 doi:10.1186/s13073-015-0176-9
Langwig, K.E., J. Hoyt, J. Kath, T. Cheng, K. Parise, W.F. Frick, J.T. Foster, A.M. Kilpatrick. 2015. Invasion dynamics of white-nose syndrome fungus, Midwestern U.S. 2012-2014. Emerging Infectious Diseases 21:1023-1026. doi:10.3201/eid2106.150123
Barlow, A. M., L. Worledge, H. Miller, K. Drees, P. Wright, J.T. Foster, C. Sobek, A.M. Borman and M. Fraser. 2015. The first confirmation of Pseudogymnoascus destructans in British Bats. Veterinary Record 177:73. doi:10.1136/vr.102923
Bernard, R.F., J.T. Foster, E.V. Willcox, and G.F. McCracken. 2015. Molecular detections of the causative agent of white-nose syndrome on Rafinesque's big-eared bats (Corynorhinus rafinesquii) and two species of migratory bats in the Southeastern United States. Journal of Wildlife Diseases 51:519–522. doi:10.7589/2014-08-202
Frick, W.F., S. Puechmaille, B. Nickel, J.R. Hoyt, K.E. Langwig, J.T. Foster, I. Horáček, T. Bartonička, K. Barlow, A-J. Haarsma, J. van der Kooij, L. Rodrigues, C. Herzog, R. Reynolds, C. Stihler, G.G. Turner, D. Fellers, A.M. Kilpatrick. 2015. Disease alters macroecological patterns of North American bats. Global Ecology and Biogeography. 24:741-749. doi: 10.1111/geb.12290
Hammond, R.L., L.H. Crampton, and J.T. Foster. 2015. Breeding biology of two endangered forest birds on the island of Kaua‘i, Hawai’i. Condor 117:31-40. doi:10.1650/condor-14-75.1
Smith, T.J., K.K. Hill, G. Xie, B.T. Foley, C. Williamson, J.T. Foster, S.L. Johnson, O. Chertov, H. Teshima, H.S. Gibbons, L.A. McNew, M.A. Karavis and L.A. Smith. 2015. Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes. Infection, Genetics and Evolution 30:102-113. doi:10.1016/j.meegid.2014.12.002
Price, E.P., D.S. Sarovich, L. Viberg, M. Mayo, M. Kaestli, A. Tuanyok, J.T. Foster, P. Keim, T. Pearson, and B.J. Currie. 2015. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology 53:282-286. doi:10.1128/JCM.02560-14
2014
Langwig. K.E., W.F. Frick, R. Reynolds, K.L. Parise, K.P. Drees, J.R. Hoyt, T.L. Cheng, T.H. Kunz, J.T. Foster, and A.M. Kilpatrick. 2014. Drivers of seasonality in white-nose syndrome, a disease of hibernating mammals. Proceedings of the Royal Society B. 282: 20142335. dx.doi.org/10.1098/rspb.2014.2335.
Gopaul, K.K., J. Sells, R. Lee, S.M. Beckstrom-Sternberg, J.T. Foster and A.M. Whatmore. 2014. Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species. BMC Research Notes 7:903. doi:10.1186/1756-0500-7-903.
Wan, X., L. Qian, S. Hou, K.P. Drees, J.T. Foster, J.T. Douglas. 2014. Complete genome sequences of Beijing and Manila family strains of Mycobacterium tuberculosis. Genome Announcements 2(6):e01135-14. doi:10.1128/genomeA.01135-14.
Rawat, A., D.M. Engelthaler, E.M. Driebe, P. Keim, and J.T. Foster. 2014. MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing. PLoS ONE 9:e110915. doi: 10.1371/journal.pone.0110915.
Okinaka, R.T., J. Challacombe, K. Drees, D. Birdsell, N. Janke, A. Naumann, M. Seymour, H. O’Neill, J. Schupp, J. Sahl, J.T. Foster, T. Pearson, P. Turnbull and P. Keim. 2014. The genome sequence of Bacillus anthracis, STI, the Sterne-like Georgian/Soviet vaccine strain. Genome Announcements 2: e00853-14. doi: 10.1128/genomeA.00853-14.
Kreizinger, Z., J.T. Foster, Z. Rónai, K. Sulyok, A. Csivincsik, E. Wehmann, S. Jánosi, and M. Gyuranecz. 2014. Genetic relatedness of Brucella suis biovar 2 isolates from hares, wild boars and domestic pigs from Hungary and Europe. Veterinary Microbiology 172:492-498. DOI: 10.1016/j.vetmic.2014.05.031.
Legagneux, P., L.L. Berzins, M. Forbes, N.J. Harms, H. Hennin, S. Bourgeon, J.T. Foster, H.G. Gilchrist, J. Bety, O.P. Love, S. Descamps, G. Burness. 2014. No selection on avian immune traits in response to a highly virulent pathogen. Evolutionary Applications 7:765-773. DOI:10.1111/eva.12180.
Walker, F.M., J.T. Foster, K.P. Drees, and C.L. Chambers. 2014. Spotted bat (Euderma maculatum) microsatellite discovery using Illumina sequencing. Conservation Genetics Resources 6:457-459. DOI:10.1007/s12686-013-0125-0.
Shuey, M.M., K. Drees, D. Lindner, P. Keim, and J.T. Foster. 2014. A highly sensitive qPCR assay for the detection and differentiation of Pseudogymnoascus destructans and Pseudogymnoascus species. Applied and Environmental Microbiology 80:1726-1731. DOI: 10.1128/AEM.02897-13.
Atkinson, C.T., R.B. Utzurrum, D.A. LaPointe, R.J. Camp, L.H. Crampton, J.T. Foster, and T.W. Giambelluca. 2014. Changing climate and the altitudinal range of avian malaria in the Hawaiian Islands-an ongoing conservation crisis on the island of Kaua‘i. Global Change Biology 8:2426-2436. DOI: 10.1111/gcb.12535.
Wattam, R., J.T. Foster, S. Mane, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, A. Dickerman, P. Keim, T. Pearson, M. Shukla, D. Ward, K. Williams, B. Sobral, R. Tsolis, A. Whatmore, and D. O’Callaghan. 2014. Comparative phylogenomics and evolution of the Brucellae: a path to virulence. Journal of Bacteriology 196:920-30. DOI: 10.1128/JB.01091-13.
Baltrus, D., K. Dougherty, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, and J.T. Foster. 2014. Incongruence between MLST and whole genome based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale. Molecular Plant Pathology. 15: 461–465. DOI: 10.1111/mpp.12103.
2013
Qu, P-H., S-Y Chen, H.C. Scholz, H-J Busse, G. Quan, P. Kämpfer, J.T. Foster, S.P. Glaeser, C. Cha, and Z-C Yang. 2013. Francisella guangzhouensis sp. nov., isolated from air conditioning systems. International Journal of Systematic and Evolutionary Microbiology 63:3628-3635. DOI: 10.1099/ijs.0.049916-0.
Busch, J.D., R. Van Andel, T. Rocke, N. Stone, K. Cobble, J. Lee, R. Nera, M. VerSteeg, J. Corcoran, J. Cordova, W. Van Pelt, M. Shuey, J.T. Foster, J. Schupp, S. Beckstrom-Sternberg, J. Beckstrom-Sternberg, S. Smith, J. Rodriguez-Ramos, J. Williamson, P. Keim, and D. Wagner. 2013. The innate immune response may be important for surviving plague in wild Gunnison’s prairie dogs. Journal of Wildlife Diseases 49: 920-931.
Price, E.P., D.S. Sarovich, J.R. Webb, J.L. Ginther, M. Mayo, J.M. Cook, M. Seymour, M. Kaestli, V. Theobald, J.D. Busch, J.T. Foster, P. Keim, D.M. Wagner, A. Tuanyok, T. Pearson, B.J. Currie. 2013. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS One 8: e71647. DOI: 10.1371/journal.pone.0071647
Garofolo, G., F. De Massis, K. Zilli, M. Ancora, C. Cammà, P. Calistri, E. Di Giannatale, and J.T. Foster. 2013. Investigating genetic diversity of Brucella abortus and B. melitensis in Italy using MLVA-16. Infection, Genetics and Evolution 19: 59–70. DOI: 10.1016/j.meegid.2013.06.021.
Leiser, O., J.L. Corn, B. Schmit, P. Keim, and J.T. Foster. 2013. Feral swine brucellosis in the United States and prospective genetic techniques for disease epidemiology. Veterinary Microbiology 166: 1–10. DOI: 10.1016/j.vetmic.2013.02.025.
Birdsell, D.N., M. Antwerpen, P. Keim, M. Hanczaruk, J.T. Foster, J.W. Sahl, D.M. Wagner, and G. Grass. 2013. Draft genome sequences of two Bulgarian Bacillus anthracis strains. GenomeA (ASM). 1:e00152-13. DOI: 10.1128/genomeA.00152-13.
Gyuranecz, M., B. D. Rannals, C.A. Allen, S. Jánosic, P.S. Keim, and J.T. Foster. 2013. Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel. BMC Veterinary Research. 9:76. DOI: 10.1186/1746-6148-9-76.
Gyuranecz, M., J.T. Foster, H. Ip, K.F. Egstad, A. Dan, U. Höfle, P.G. Parker, J.M. Higashiguchi, M.A. Skinner, G.M. Dorrestein, B. Lucio-Martinez, S. Solt, Y.J. Kim, M. Uhart, A. Pereda, G. González Hein, J-M Blanco, and K. Erdélyi. 2013. Worldwide phylogenetic relationship of avian poxviruses. Journal of Virology 87(9):4938. DOI: 10.1128/JVI.03183-12.
2012
Foster, J.T., L.B. Price, S.M. Beckstrom-Sternberg, W.D. Brown, D.M. Kiesling, C. Allen, T. Pearson, F. Roberto, J. Beckstrom-Sternberg, and P. Keim. 2012. Genotyping of Brucella species using clade specific SNPs. BMC Microbiology 12:110. DOI:10.1186/1471-2180-12-110.
Price, E.P., M. Seymour, D. Sarovich, J. Latham, S. Wolken, J. Mason, G. Vincent, K. Drees, S. Beckstrom-Sternberg, A. Phillippy, S. Koren, R. Okinaka, W. Chung, J. Schupp, D. Wagner, R. Vipond, J.T. Foster, N. Bergman, J. Burans, T. Pearson, T. Brooks and P. Keim. 2012. Molecular epidemiologic investigation of an anthrax outbreak in heroin users, Europe. Emerging Infectious Diseases 18(8): DOI: 10.3201/eid1808.111343.
Price, E.P., J. Dale, J. Cook, D. Sarovich, M. Seymour, J. Ginther, E. Kaufman, S. Beckstrom-Sternberg, M. Mayo, M. Kaestli, M. Glass, J. Gee, V. Wuthiekanun, J.M. Warner, A. Baker, J.T. Foster, P. Tan, A. Tuanyok, D. Limmathurotsakul, S. Peacock, B. Currie, D. Wagner, P. Keim, and T. Pearson. 2012. Development and validation of Burkholderia pseudomallei real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One. 7(5): e37723. DOI:10.1371/journal.pone.0037723.
Price, L.B., M. Stegger, H. Hasman, M. Aziz, J. Larsen, P. Andersen, T. Pearson, A. Waters, J.T. Foster, J. Schupp, J. Gillece, E. Driebe, C. Liu, B. Springer, I. Zdovc, A. Battisti, A. Franco, J. Żmudzki, S. Schwarz, P. Butaye, E. Jouy, C. Pomba, C. Porrero, R. Ruimy, T. Smith, D.A. Robinson, J.S. Weese, C. Arriola, F. Yu, F. Laurent, P. Keim, R. Skov, F. Aarestrup. 2012. Staphylococcus aureus CC398: Host adaptation and emergence of methicillin resistance in livestock. mBio 3(1):e00305-11. DOI: 10.1128/mBio.00305-11.
2011
Dale, J., E.P. Price, H. Hornstra, J.D. Busch, M. Mayo, D. Godoy, V. Wuthiekanum, A. Baker, J.T. Foster, D.M. Wagner, A. Tuanyok, J. Warner, B.G. Spratt, S.J. Peacock, B.J. Currie, P. Keim, and T. Pearson. 2011. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Neglected Tropical Diseases. 5(12): e1381. DOI:10.1371/journal.pntd.0001381.
Rivarola, M., J.T. Foster (co-1st author), A.P. Chan, A.L. Williams, D. Rice, J. Liu, A. Melake-Berhan, H. Hout Creasy, D. Puiu, M.J. Rosovitz, H.M. Khouri, S.M. Beckstrom-Sternberg, G.J. Allan, P. Keim, J. Ravel and P.D. Rabinowicz. 2011. Organelle genome sequencing and worldwide genetic diversity of castor bean chloroplast genomes. PLoS One 6(7): e21743. DOI:10.1371/journal.pone.0021743.
Chanturia, G., D.N. Birdsell, M. Kekelidze, E. Zhgenti, G. Babuadze, N. Tsertsvadze, S. Tsanava, P. Imnadze, S. M. Beckstrom-Sternberg, J. S. Beckstrom-Sternberg, M. D. Champion, S. Sinari, M.Y. Gyuranecz, J. Farlow, A.H. Pettus, E.L. Kaufman, J. D. Busch, T. Pearson, J.T. Foster, A.J. Vogler, D.M. Wagner, and P. Keim. 2011. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. BMC Microbiology 11:139.
Waters, A.E., T. Contente-Cuomo, J. Buchhagen, C.M. Liu, L. Watson, K. Pearce, J.T. Foster, J. Bowers, P.S. Keim, and L.B. Price. 2011. High prevalence of multidrug resistant Staphylococcus aureus in US meat and poultry. Clinical Infectious Diseases 52:1-4. DOI: 10.1093/cid/cir181.
Davis, T.S., R.W. Hofstetter, J.T. Foster, N.E. Foote and P. Keim. 2011. Interactions between the yeast Ogataea pini and filamentous fungi associated with the western pine beetle. Microbial Ecology 61: 626-634. DOI: 10.1007/s00248-010-9773-8
Kunz, T.H., J.T. Foster, W.F. Frick, A.M. Kilpatrick, G.F. McCracken, M.S. Moore, J.D. Reichard, D. Reeder, and A.H. Robbins. 2011. White-nose syndrome: An overview of ongoing and future research needs. Pp. 189-203. In Proceedings of Protection of Threatened Bats at Coal Mines (K.C. Vories A.H. Caswell, and T.M. Price, eds). Office of Surface Mining and Coal Research Center, Southern Illinois University, Carbondale, IL.
Okinaka, R.T., K.K. Hill, T. Pearson, J.T. Foster, A. J. Vogler, A. Tuanyok, D. M. Wagner, and P. Keim. 2011. Forensic Analysis in Bacterial Pathogens, Chapter 16. In Microbial Forensics, 2nd Edition. (B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S.A. Morse, eds). Elsevier Press. Pp. 259-276.
Foster, J.T., R.L. Bull, and P. Keim. 2011. Ricin Forensics, Chapter 19. In Microbial Forensics, 2nd Edition (B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S.A. Morse, eds). Elsevier Press. Pp. 315-326.
2010
Davis, T.S., R.W. Hofstetter, K.D. Klepzig, J.T. Foster, and P. Keim. 2010. Interactions between multiple fungi isolated from two bark beetles, Dendroctonus brevicomis and D. frontalis (Coleoptera: Curculionidae). Journal of Yeast and Fungal Research. 1:118-126.
Foster, J.T., G.J. Allan, A.P. Chan, P.D. Rabinowicz, J. Ravel, P.J. Jackson, and P. Keim. 2010. Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). BMC Plant Biology 10:13
Price, E.P., H. Hornstra, D. Limmathurotsakul, A. Vogler, T. Max, D. Sarovich, J. Dale, J. Ginther, B. Leadem, R. Colman, J.T. Foster, A. Tuanyok, D. Wagner, S. Peacock, T. Pearson, and P. Keim. 2010. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathogens. 6(1): e1000725. DOI:10.1371
2009
Pearson, T., P. Giffard, S. Beckstrom-Sternberg, R. Auerbach, H. Hornstra, A. Tuanyok, M.B. Glass, B. Leadem, J.S. Beckstrom-Sternberg, G.J. Allan, J.T. Foster, et al. 2009. Accurate phylogeographic reconstruction of a bacterium species with high levels of lateral gene transfer. BMC Biology 7:78 DOI:10.1186/1741-7007-7-78
Pearson, T., R.T. Okinaka, J.T. Foster, and P. Keim. 2009. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infection, Genetics & Evolution 9:1010-19.
Foster, J.T., S.M. Beckstrom-Sternberg, T. Pearson, J. Beckstrom-Sternberg, P. Chain, F. Roberto, J. Burans, and P. Keim. 2009. Whole genome phylogeny and origins of the genus Brucella. Journal of Bacteriology. 191: 2864-2870
Kenefic, L., T. Pearson, R. Okinaka, J. Schupp, D. Wagner, J. Ravel, A. Hoffmaster, C. Trim, W. Chung, J. Beaudry, J.T. Foster, J. Mead, and P. Keim. 2009. Pre-Columbian origins for North American anthrax. PLoS ONE. 4: e4813. DOI:10.1371/journal.pone.0004813.
Reding, D.M., J.T. Foster, H. James, H.D. Pratt and R.C. Fleischer. 2009. Convergent evolution of “creepers” in the Hawaiian honeycreeper radiation. Biology Letters. 5:221-224. * Chosen by the editor as one of top papers of the year for 2009.
Foster, J.T. 2009. The history and impacts of exotic birds in the Hawaiian Islands. Chapter 13 in T.K. Pratt, C.T. Atkinson, P.C. Banko, J.D. Jacobi, and B.L. Woodworth, eds. Conservation biology of Hawaiian Forest Birds. Yale University Press, New Haven, CT.
2008 and before
Foster, J.T., R.T. Okinaka, R. Svensson, K. Shaw, B.K. De, R. Robison, W. Probert, L. Kenefic, W. Brown, and P. Keim. 2008. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. Journal of Clinical Microbiology 46: 296-301.
Malcolm, T.R., K.J. Swinnerton, J.J. Groombridge, B.D. Sparklin, C.N. Brosius, J.P. Vetter, and J.T. Foster. 2008. Ground-based rodent control in a remote Hawaiian rainforest on Maui. Pacific Conservation Biology 14:206-214.
Schmidt, B.K., J.T. Foster, G.R. Angehr, K.L. Durrant, and R.C. Fleischer. 2008. A new species of African Forest Robin from Gabon (Passeriformes: Muscicapidae: Stiphrornis). Zootaxa 1850: 27-42.
Foster, J.T., B.L. Woodworth, P.J. Hart, L.E. Eggert, D. Palmer, D.C. Duffy, and R.C. Fleischer. 2007. Genetic structure and evolved malaria resistance in Hawaiian honeycreepers. Molecular Ecology 16:4738-4746.
Foster, J.T. and S. K. Robinson. 2007. Introduced birds and the fate of Hawaiian rainforests. Conservation Biology 21:1248–1257.
Runde, D. E., W.C. Pitt, and J.T. Foster. 2007. Population ecology and potential impacts of emerging populations of exotic parrots. Managing Vertebrate Invasive Species: Proceedings of an International Symposium (G.W. Witmer, W.C. Pitt, K. A. Fagerstone, Eds). USDA/APHIS/WS, National Wildlife Research Center, Fort Collins, CO.
Tweed, E.J., J.T. Foster, B.L. Woodworth, W.B. Monahan, and J.L. Kellerman. 2006. Breeding biology and success of a reintroduced population of the critically endangered Puaiohi (Myadestes palmeri). Auk 123:753-763.
Foster, J.T., E.J. Tweed, R.J. Camp, B.L. Woodworth, C.D. Adler, and T. Telfer. 2004. Long-term population changes of native and introduced birds in the Alaka'i Swamp, Kaua'i. Conservation Biology 18:716-725.
Tweed, E.J., J.T. Foster, B.L. Woodworth, P. Oesterle, C. Kuehler, and A. Lieberman. 2003. Survival, dispersal, and home-range establishment of captive-raised Puaiohi. Biological Conservation 111:1-9.
Foster, J.T., J.M. Scott, and P.W. Sykes. 2000. ‘Akikiki (Oreomystis bairdi) In The Birds of North America, No. 552 (A. Poole and F. Gill, eds.). The Birds of North America Inc., Philadelphia, PA.